Multimodal integration of radiology, pathology and genomics for prediction of response to PD-(L) 1 blockade in patients with non-small cell lung cancer

RS Vanguri, J Luo, AT Aukerman, JV Egger, CJ Fong… - Nature cancer, 2022 - nature.com
Immunotherapy is used to treat almost all patients with advanced non-small cell lung cancer
(NSCLC); however, identifying robust predictive biomarkers remains challenging. Here we …

Prediction of on-target and off-target activity of CRISPR–Cas13d guide RNAs using deep learning

HH Wessels, A Stirn, A Méndez-Mancilla, EJ Kim… - Nature …, 2024 - nature.com
Transcriptome engineering applications in living cells with RNA-targeting CRISPR effectors
depend on accurate prediction of on-target activity and off-target avoidance. Here we design …

Chexpert: A large chest radiograph dataset with uncertainty labels and expert comparison

J Irvin, P Rajpurkar, M Ko, Y Yu, S Ciurea-Ilcus… - Proceedings of the AAAI …, 2019 - aaai.org
Large, labeled datasets have driven deep learning methods to achieve expert-level
performance on a variety of medical imaging tasks. We present CheXpert, a large dataset …

Large-scale screening to distinguish between COVID-19 and community-acquired pneumonia using infection size-aware classification

F Shi, L Xia, F Shan, B Song, D Wu, Y Wei… - Physics in medicine …, 2021 - iopscience.iop.org
The worldwide spread of coronavirus disease (COVID-19) has become a threat to global
public health. It is of great importance to rapidly and accurately screen and distinguish …

Deep-learning-assisted diagnosis for knee magnetic resonance imaging: development and retrospective validation of MRNet

N Bien, P Rajpurkar, RL Ball, J Irvin, A Park… - PLoS …, 2018 - journals.plos.org
Background Magnetic resonance imaging (MRI) of the knee is the preferred method for
diagnosing knee injuries. However, interpretation of knee MRI is time-intensive and subject …

The effect of image resolution on deep learning in radiography

CF Sabottke, BM Spieler - Radiology: Artificial Intelligence, 2020 - pubs.rsna.org
Purpose To examine variations of convolutional neural network (CNN) performance for
multiple chest radiograph diagnoses and image resolutions. Materials and Methods This …

A deep learning methodology for improved breast cancer diagnosis using multiparametric MRI

Q Hu, HM Whitney, ML Giger - Scientific reports, 2020 - nature.com
Multiparametric magnetic resonance imaging (mpMRI) has been shown to improve
radiologists' performance in the clinical diagnosis of breast cancer. This machine learning …

The false positive problem of automatic bot detection in social science research

A Rauchfleisch, J Kaiser - PloS one, 2020 - journals.plos.org
The identification of bots is an important and complicated task. The bot classifier" Botometer"
was successfully introduced as a way to estimate the number of bots in a given list of …

Predicting HLA class II antigen presentation through integrated deep learning

B Chen, MS Khodadoust, N Olsson, LE Wagar… - Nature …, 2019 - nature.com
Accurate prediction of antigen presentation by human leukocyte antigen (HLA) class II
molecules would be valuable for vaccine development and cancer immunotherapies …

Artificial intelligence based medical decision support system for early and accurate breast cancer prediction

LK Singh, M Khanna, R Singh - Advances in engineering software, 2023 - Elsevier
Feature selection, which picks the optimal subset of characteristics related to the target data
by deleting unnecessary data, is one of the most important aspects of the machine learning …