Homoeologous exchanges, segmental allopolyploidy, and polyploid genome evolution

AS Mason, JF Wendel - Frontiers in Genetics, 2020 - frontiersin.org
Polyploidy is a major force in plant evolution and speciation. In newly formed allopolyploids,
pairing between related chromosomes from different subgenomes (homoeologous …

Genome triplication drove the diversification of Brassica plants

F Cheng, J Wu, X Wang - Horticulture research, 2014 - academic.oup.com
The genus Brassica belongs to the plant family Brassicaceae, which includes many
important crop species that are used as oilseed, condiments, or vegetables throughout the …

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

S Liu, Y Liu, X Yang, C Tong, D Edwards… - Nature …, 2014 - nature.com
Polyploidization has provided much genetic variation for plant adaptive evolution, but the
mechanisms by which the molecular evolution of polyploid genomes establishes genetic …

Improved Brassica rapa reference genome by single-molecule sequencing and chromosome conformation capture technologies

L Zhang, X Cai, J Wu, M Liu, S Grob… - Horticulture …, 2018 - academic.oup.com
Brassica rapa comprises several important cultivated vegetables and oil crops. Current
reference genome assemblies of Brassica rapa are quite fragmented and not highly …

Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics

WB Jiao, K Schneeberger - Nature communications, 2020 - nature.com
Despite hundreds of sequenced Arabidopsis genomes, very little is known about the degree
of genomic collinearity within single species, due to the low number of chromosome-level …

The high‐quality genome of Brassica napus cultivar 'ZS11' reveals the introgression history in semi‐winter morphotype

F Sun, G Fan, Q Hu, Y Zhou, M Guan, C Tong… - The Plant …, 2017 - Wiley Online Library
Allotetraploid oilseed rape (Brassica napus L.) is an agriculturally important crop. Cultivation
and breeding of B. napus by humans has resulted in numerous genetically diverse …

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

IAP Parkin, C Koh, H Tang, SJ Robinson, S Kagale… - Genome biology, 2014 - Springer
Background Brassica oleracea is a valuable vegetable species that has contributed to
human health and nutrition for hundreds of years and comprises multiple distinct cultivar …

The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure

S Kagale, C Koh, J Nixon, V Bollina, WE Clarke… - Nature …, 2014 - nature.com
Camelina sativa is an oilseed with desirable agronomic and oil-quality attributes for a viable
industrial oil platform crop. Here we generate the first chromosome-scale high-quality …

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

T Slotte, KM Hazzouri, JA Ågren, D Koenig, F Maumus… - Nature …, 2013 - nature.com
The shift from outcrossing to selfing is common in flowering plants,, but the genomic
consequences and the speed at which they emerge remain poorly understood. An excellent …

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions

A Haudry, AE Platts, E Vello, DR Hoen, M Leclercq… - Nature …, 2013 - nature.com
Despite the central importance of noncoding DNA to gene regulation and evolution,
understanding of the extent of selection on plant noncoding DNA remains limited compared …