Epigenetic reprogramming of the zygote in mice and men: on your marks, get set, go!

R Fraser, CJ Lin - Reproduction, 2016 - rep.bioscientifica.com
Gametogenesis (spermatogenesis and oogenesis) is accompanied by the acquisition of
gender-specific epigenetic marks, such as DNA methylation, histone modifications and …

Histone variants shape chromatin states in Arabidopsis

B Jamge, ZJ Lorković, E Axelsson, A Osakabe… - Elife, 2023 - elifesciences.org
How different intrinsic sequence variations and regulatory modifications of histones combine
in nucleosomes remain unclear. To test the importance of histone variants in the …

Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus

KA Bird, CE Niederhuth, S Ou, M Gehan… - New …, 2021 - Wiley Online Library
Allopolyploidisation merges evolutionarily distinct parental genomes (subgenomes) into a
single nucleus. A frequent observation is that one subgenome is 'dominant'over the other …

Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae

K Palos, AC Nelson Dittrich, L Yu, JR Brock… - The Plant …, 2022 - academic.oup.com
Long intergenic noncoding RNAs (lincRNAs) are a large yet enigmatic class of eukaryotic
transcripts that can have critical biological functions. The wealth of RNA-sequencing (RNA …

The unusual predominance of maintenance DNA methylation in Spirodela polyrhiza

A Harkess, AJ Bewick, Z Lu… - G3: Genes …, 2024 - academic.oup.com
Duckweeds are among the fastest reproducing plants, able to clonally divide at exponential
rates. However, the genetic and epigenetic impact of clonality on plant genomes is poorly …

Warmer temperature during asexual reproduction induce methylome, transcriptomic, and lasting phenotypic changes in Fragaria vesca ecotypes

YP Zhang, G Fan, T Toivainen, T Tengs… - Horticulture …, 2023 - academic.oup.com
Plants must adapt with increasing speed to global warming to maintain their fitness. One
rapid adaptation mechanism is epigenetic memory, which may provide organisms sufficient …

Methylome, transcriptome, and phenotype changes induced by temperature conditions experienced during sexual reproduction in Fragaria vesca

Y Zhang, T Toivainen, K Mackenzie… - Physiologia …, 2023 - Wiley Online Library
Temperature conditions experienced during embryogenesis and seed development may
induce epigenetic changes that increase phenotypic variation in plants. Here we investigate …

Discrimination of DNA methylation signal from background variation for clinical diagnostics

R Sanchez, X Yang, T Maher… - International journal of …, 2019 - mdpi.com
Advances in the study of human DNA methylation variation offer a new avenue for the
translation of epigenetic research results to clinical applications. Although current …

Pilocytic astrocytoma demethylation and transcriptional landscapes link bZIP transcription factors to immune response

CF Aichmüller, M Iskar, DTW Jones… - Neuro …, 2020 - academic.oup.com
Background Pilocytic astrocytoma (PA) is the most common pediatric brain tumor. While
genome and transcriptome landscapes are well studied, data of the complete methylome …

Unusual predominance of maintenance DNA methylation in Spirodela polyrhiza

A Harkess, AJ Bewick, Z Lu, P Fourounjian, J Messing… - bioRxiv, 2020 - biorxiv.org
methylcytosine (5mC) is a modified base often described as necessary for the proper
regulation of genes and transposons and for the maintenance of genome integrity in plants …