Data compression for sequencing data
S Deorowicz, S Grabowski - Algorithms for Molecular Biology, 2013 - Springer
Post-Sanger sequencing methods produce tons of data, and there is a generalagreement
that the challenge to store and process them must be addressedwith data compression. In …
that the challenge to store and process them must be addressedwith data compression. In …
Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies
High-throughput sequencing technologies produce large collections of data, mainly DNA
sequences with additional information, requiring the design of efficient and effective …
sequences with additional information, requiring the design of efficient and effective …
A survey on data compression methods for biological sequences
The ever increasing growth of the production of high-throughput sequencing data poses a
serious challenge to the storage, processing and transmission of these data. As frequently …
serious challenge to the storage, processing and transmission of these data. As frequently …
Sequence statistical code based data compression algorithm for wireless sensor network
S Jancy, C Jayakumar - Wireless Personal Communications, 2019 - Springer
Sensors play an integral part in the technologically advanced real world. Wireless sensors
are which have powered by batteries with limited capacity. Hence energy efficiency is one of …
are which have powered by batteries with limited capacity. Hence energy efficiency is one of …
A new algorithm for “the LCS problem” with application in compressing genome resequencing data
Background The longest common subsequence (LCS) problem is a classical problem in
computer science, and forms the basis of the current best-performing reference-based …
computer science, and forms the basis of the current best-performing reference-based …
Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning
Motivation: Information-theoretic and compositional analysis of biological sequences, in
terms of k-mer dictionaries, has a well established role in genomic and proteomic studies …
terms of k-mer dictionaries, has a well established role in genomic and proteomic studies …
Adaptive efficient compression of genomes
Abstract Modern high-throughput sequencing technologies are able to generate DNA
sequences at an ever increasing rate. In parallel to the decreasing experimental time and …
sequences at an ever increasing rate. In parallel to the decreasing experimental time and …
Nongreedy unbalanced Huffman tree compressor for single and multifasta files
S Alyami, CH Huang - Journal of Computational Biology, 2020 - liebertpub.com
Next-generation sequencing technologies are producing genomic data at ever-increasing
rates. It has become a challenge to store, transmit, and process the massive quantity of data …
rates. It has become a challenge to store, transmit, and process the massive quantity of data …
K 2 and : efficient alignment-free sequence similarity measurement based on Kendall statistics
J Lin, DA Adjeroh, BH Jiang, Y Jiang - Bioinformatics, 2018 - academic.oup.com
Motivation Alignment-free sequence comparison methods can compute the pairwise
similarity between a huge number of sequences much faster than sequence-alignment …
similarity between a huge number of sequences much faster than sequence-alignment …
The intrinsic combinatorial organization and information theoretic content of a sequence are correlated to the DNA encoded nucleosome organization of eukaryotic …
F Utro, V Di Benedetto, DFV Corona… - Bioinformatics, 2016 - academic.oup.com
Motivation: Thanks to research spanning nearly 30 years, two major models have emerged
that account for nucleosome organization in chromatin: statistical and sequence specific …
that account for nucleosome organization in chromatin: statistical and sequence specific …