Metagenomics and future perspectives in virus discovery

JL Mokili, F Rohwer, BE Dutilh - Current opinion in virology, 2012 - Elsevier
Monitoring the emergence and re-emergence of viral diseases with the goal of containing
the spread of viral agents requires both adequate preparedness and quick response …

Aedes spp. and Their Microbiota: A Review

F Scolari, M Casiraghi, M Bonizzoni - Frontiers in microbiology, 2019 - frontiersin.org
Aedes spp. are a major public health concern due to their ability to be efficient vectors of
dengue, Chikungunya, Zika, and other arboviruses. With limited vaccines available and no …

Deep sequencing reveals extensive variation in the gut microbiota of wild mosquitoes from K enya

J Osei‐Poku, CM Mbogo, WJ Palmer… - Molecular …, 2012 - Wiley Online Library
The mosquito midgut is a hostile environment that vector‐borne parasites must survive to be
transmitted. Commensal bacteria in the midgut can reduce the ability of mosquitoes to …

Applications of next-generation sequencing technologies to diagnostic virology

L Barzon, E Lavezzo, V Militello, S Toppo… - International journal of …, 2011 - mdpi.com
Novel DNA sequencing techniques, referred to as “next-generation” sequencing (NGS),
provide high speed and throughput that can produce an enormous volume of sequences …

[HTML][HTML] Culicoides biting midges, arboviruses and public health in Europe

S Carpenter, MH Groschup, C Garros… - Antiviral research, 2013 - Elsevier
The emergence of multiple strains of bluetongue virus (BTV) and the recent discovery of
Schmallenberg virus (SBV) in Europe have highlighted the fact that exotic Culicoides-borne …

Use of Sequence-Independent, Single-Primer-Amplification (SISPA) for rapid detection, identification, and characterization of avian RNA viruses

K Chrzastek, D Lee, D Smith, P Sharma, DL Suarez… - Virology, 2017 - Elsevier
Current technologies with next generation sequencing have revolutionized metagenomics
analysis of clinical samples. To achieve the non-selective amplification and recovery of low …

Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood

KG Frey, JE Herrera-Galeano, CL Redden, TV Luu… - BMC genomics, 2014 - Springer
Background The introduction of benchtop sequencers has made adoption of whole genome
sequencing possible for a broader community of researchers than ever before. Concurrently …

RNA shotgun metagenomic sequencing of northern California (USA) mosquitoes uncovers viruses, bacteria, and fungi

JA Chandler, RM Liu, SN Bennett - Frontiers in microbiology, 2015 - frontiersin.org
Mosquitoes, most often recognized for the microbial agents of disease they may carry,
harbor diverse microbial communities that include viruses, bacteria, and fungi, collectively …

[HTML][HTML] An overview of malaria transmission from the perspective of Amazon Anopheles vectors

PFP Pimenta, AS Orfano, AC Bahia… - Memórias do Instituto …, 2015 - SciELO Brasil
In the Americas, areas with a high risk of malaria transmission are mainly located in the
Amazon Forest, which extends across nine countries. One keystone step to understanding …

[HTML][HTML] Enhanced arbovirus surveillance with deep sequencing: Identification of novel rhabdoviruses and bunyaviruses in Australian mosquitoes

LL Coffey, BL Page, AL Greninger, BL Herring… - Virology, 2014 - Elsevier
Viral metagenomics characterizes known and identifies unknown viruses based on
sequence similarities to any previously sequenced viral genomes. A metagenomics …