[HTML][HTML] Sweating the assets of flavin cofactors: new insight of chemical versatility from knowledge of structure and mechanism

D Leys, NS Scrutton - Current opinion in structural biology, 2016 - Elsevier
Highlights•The versatile chemistry of the flavin cofactor underpins a wide range of enzyme
reactions.•New flavin species have recently been discovered, including prenylated flavins …

Evolutionary and molecular foundations of multiple contemporary functions of the nitroreductase superfamily

E Akiva, JN Copp, N Tokuriki… - Proceedings of the …, 2017 - National Acad Sciences
Insight regarding how diverse enzymatic functions and reactions have evolved from
ancestral scaffolds is fundamental to understanding chemical and evolutionary biology, and …

Revealing unexplored sequence-function space using sequence similarity networks

JN Copp, E Akiva, PC Babbitt, N Tokuriki - Biochemistry, 2018 - ACS Publications
The rapidly expanding number of protein sequences found in public databases can improve
our understanding of how protein functions evolve. However, our current knowledge of …

Ligand cross-feeding resolves bacterial vitamin B12 auxotrophies

G Wienhausen, C Moraru, S Bruns, DQ Tran, S Sultana… - Nature, 2024 - nature.com
Cobalamin (vitamin B12, herein referred to as B12) is an essential cofactor for most marine
prokaryotes and eukaryotes,. Synthesized by a limited number of prokaryotes, its scarcity …

Optimization of semi-anaerobic vitamin B12 (cyanocobalamin) production from rice bran oil using Propionibacterium freudenreichii PTCC1674

R Hedayati, M Hosseini, GD Najafpour - Biocatalysis and Agricultural …, 2020 - Elsevier
Vitamin B12 contributes many substantial metabolic cycles in the living organisms. Since
human beings cannot produce such co-factor by their metabolism, they have to receive this …

Mechanism-informed refinement reveals altered substrate-binding mode for catalytically competent nitroreductase

W Pitsawong, CA Haynes, RL Koder, DW Rodgers… - Structure, 2017 - cell.com
Nitroreductase (NR) from Enterobacter cloacae reduces diverse nitroaromatics including
herbicides, explosives, and prodrugs, and holds promise for bioremediation, prodrug …

Iodotyrosine deiodinase: a unique flavoprotein present in organisms of diverse phyla

A Phatarphekar, JM Buss, SE Rokita - Molecular BioSystems, 2014 - pubs.rsc.org
Iodide is required for thyroid hormone synthesis in mammals and other vertebrates. The role
of both iodide and iodinated tyrosine derivatives is currently unknown in lower organisms …

Redox control of iodotyrosine deiodinase

J Hu, Q Su, JL Schlessman, SE Rokita - Protein Science, 2019 - Wiley Online Library
The redox chemistry of flavoproteins is often gated by substrate and iodotyrosine deiodinase
(IYD) has the additional ability to switch between reaction modes based on the substrate …

A bioassay for the detection of benzimidazoles reveals their presence in a range of environmental samples

TS Crofts, Y Men, L Alvarez-Cohen… - Frontiers in microbiology, 2014 - frontiersin.org
Cobamides are a family of enzyme cofactors that include vitamin B12 (cobalamin) and are
produced solely by prokaryotes. Structural variability in the lower axial ligand has been …

Sequence conservation does not always signify a functional imperative as observed in the nitroreductase superfamily

JM Musila, SE Rokita - Biochemistry, 2022 - ACS Publications
Consensus sequences have the potential to help classify the structure and function of
proteins and highlight key regions that may contribute to their biological properties. Often …