Deep learning in cancer diagnosis, prognosis and treatment selection

KA Tran, O Kondrashova, A Bradley, ED Williams… - Genome Medicine, 2021 - Springer
Deep learning is a subdiscipline of artificial intelligence that uses a machine learning
technique called artificial neural networks to extract patterns and make predictions from …

Clinical and translational values of spatial transcriptomics

L Zhang, D Chen, D Song, X Liu, Y Zhang… - … and Targeted Therapy, 2022 - nature.com
The combination of spatial transcriptomics (ST) and single cell RNA sequencing (scRNA-
seq) acts as a pivotal component to bridge the pathological phenomes of human tissues with …

Tumor cell invasion in glioblastoma

A Vollmann-Zwerenz, V Leidgens, G Feliciello… - International journal of …, 2020 - mdpi.com
Glioblastoma (GBM) is a particularly devastating tumor with a median survival of about 16
months. Recent research has revealed novel insights into the outstanding heterogeneity of …

Alignment and integration of spatial transcriptomics data

R Zeira, M Land, A Strzalkowski, BJ Raphael - Nature Methods, 2022 - nature.com
Spatial transcriptomics (ST) measures mRNA expression across thousands of spots from a
tissue slice while recording the two-dimensional (2D) coordinates of each spot. We …

Unsupervised spatially embedded deep representation of spatial transcriptomics

H Xu, H Fu, Y Long, KS Ang, R Sethi, K Chong, M Li… - Genome Medicine, 2024 - Springer
Optimal integration of transcriptomics data and associated spatial information is essential
towards fully exploiting spatial transcriptomics to dissect tissue heterogeneity and map out …

Reference-free cell type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data

BF Miller, F Huang, L Atta, A Sahoo, J Fan - Nature communications, 2022 - nature.com
Recent technological advancements have enabled spatially resolved transcriptomic profiling
but at multi-cellular pixel resolution, thereby hindering the identification of cell-type-specific …

Spatial omics: Navigating to the golden era of cancer research

Y Wu, Y Cheng, X Wang, J Fan… - Clinical and Translational …, 2022 - Wiley Online Library
The idea that tumour microenvironment (TME) is organised in a spatial manner will not
surprise many cancer biologists; however, systematically capturing spatial architecture of …

Spatial transcriptomics: technical aspects of recent developments and their applications in neuroscience and cancer research

HE Park, SH Jo, RH Lee, CP Macks, T Ku… - Advanced …, 2023 - Wiley Online Library
Spatial transcriptomics is a newly emerging field that enables high‐throughput investigation
of the spatial localization of transcripts and related analyses in various applications for …

microRNA‐based diagnostic and therapeutic applications in cancer medicine

LF Sempere, AS Azmi, A Moore - Wiley Interdisciplinary …, 2021 - Wiley Online Library
It has been almost two decades since the first link between microRNAs and cancer was
established. In the ensuing years, this abundant class of short noncoding regulatory RNAs …

Spatial landscapes of cancers: insights and opportunities

J Chen, L Larsson, A Swarbrick… - Nature Reviews Clinical …, 2024 - nature.com
Solid tumours comprise many different cell types organized in spatially structured
arrangements, with substantial intratumour and intertumour heterogeneity. Advances in …