Protein structure prediction improves the quality of amino‐acid sequence alignment

AM Lesk, AS Konagurthu - Proteins: Structure, Function, and …, 2022 - Wiley Online Library
The basic operation in analysis of protein evolution is alignment: the specification of residue‐
residue correspondences. A structural alignment is a specification of residue‐residue …

[HTML][HTML] PrivGenDB: Efficient and privacy-preserving query executions over encrypted SNP-Phenotype database

S Jafarbeiki, A Sakzad, SK Kermanshahi… - Informatics in Medicine …, 2022 - Elsevier
Privacy and security issues limit the query executions over genomics datasets, notably
single nucleotide polymorphisms (SNPs), raised by the sensitivity of this type of data …

ACE: A Consent-Embedded privacy-preserving search on genomic database

S Jafarbeiki, A Sakzad, R Steinfeld, SK Kermanshahi… - Heliyon, 2024 - cell.com
In this paper, we introduce ACE, a consent-embedded searchable encryption scheme. ACE
enables dynamic consent management by supporting the physical deletion of associated …

Pressgendb: Privacy-preserving substring search on encrypted genomic database

S Jafarbeiki, A Sakzad, SK Kermanshahi… - … -IEEE Conference on …, 2022 - ieeexplore.ieee.org
Efficient sequencing methods produce a large amount of genetic data, and make it
accessible to researchers. This leads genomics to be considered a legitimate big data field …

[PDF][PDF] Privacy Technologies in Genomic Data with Consent: Investigation, Design and Analysis

S Jafarbeiki - scholar.archive.org
The rapid progress in DNA sequencing technology has led to a massive increase in the
amount of genomic data available for scientific research, clinical procedures, and healthcare …

[PDF][PDF] Informatics in Medicine Unlocked

S Jafarbeiki, A Sakzad, SK Kermanshahi, R Gaire… - researchmgt.monash.edu
Privacy and security issues limit the query executions over genomics datasets, notably
single nucleotide polymorphisms (SNPs), raised by the sensitivity of this type of data …