Genomic, proteomic, and systems biology approaches in biomarker discovery for multiple sclerosis

CC Huizar, I Raphael, TG Forsthuber - Cellular immunology, 2020 - Elsevier
Multiple sclerosis (MS) is a neuroinflammatory disorder characterized by autoimmune-
mediated inflammatory lesions in CNS leading to myelin damage and axonal loss. MS is a …

The human extracellular matrix diseasome reveals genotype–phenotype associations with clinical implications for age-related diseases

C Statzer, K Luthria, A Sharma, MG Kann, CY Ewald - Biomedicines, 2023 - mdpi.com
The extracellular matrix (ECM) is earning an increasingly relevant role in many disease
states and aging. The analysis of these disease states is possible with the GWAS and …

Disease-pathway association prediction based on random walks with restart and PageRank

A Ghulam, X Lei, M Guo, C Bian - IEEE Access, 2020 - ieeexplore.ieee.org
The study of disease-pathway association in human diseases is a perennial focus of the
biomedical field. The association of diseases and pathways can help in the discovery of the …

[HTML][HTML] The extracellular matrix phenome across species

C Statzer, CY Ewald - Matrix biology plus, 2020 - Elsevier
Extracellular matrices are essential for cellular and organismal function. Recent genome-
wide and phenome-wide association studies started to reveal a broad spectrum of …

Computational approaches for unraveling the effects of variation in the human genome and microbiome

C Zhu, M Miller, Z Zeng, Y Wang… - Annual Review of …, 2020 - annualreviews.org
The past two decades of analytical efforts have highlighted how much more remains to be
learned about the human genome and, particularly, its complex involvement in promoting …

miRNA-4769-5p/MBP and miRNA-1827/AR as key components in intervertebral disc degeneration: A network-based analysis approach

H Manoochehri, A Taherkhani, H Tanzadehpanah… - Human Gene, 2023 - Elsevier
Intervertebral disc degeneration (IDD) is a common cause of low back pain and disability.
Standard treatment of IDD is conservative therapies and surgical treatment, that have some …

Network analysis identifies gene regulatory network indicating the role of RUNX1 in human intervertebral disc degeneration

NM Khan, ME Diaz-Hernandez, SM Presciutti, H Drissi - Genes, 2020 - mdpi.com
Intervertebral disc (IVD) degeneration (IDD) is a multifactorial physiological process which is
often associated with lower back pain. Previous studies have identified some molecular …

Primate protein-ligand interfaces exhibit significant conservation and unveil human-specific evolutionary drivers

SB King, M Singh - PLoS computational biology, 2023 - journals.plos.org
Despite the vast phenotypic differences observed across primates, their protein products are
largely similar to each other at the sequence level. We hypothesized that, since proteins …

Pathway Maps of Orphan and Complex Diseases Using an Integrative Computational Approach

K Ghedira, S Kouidhi, Y Hamdi… - BioMed Research …, 2020 - Wiley Online Library
Orphan diseases (ODs) are progressive genetic disorders, which affect a small number of
people. The principal fundamental aspects related to these diseases include insufficient …

The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics

N Matentzoglu, SM Bello, R Stefancsik, SM Alghamdi… - …, 2024 - pmc.ncbi.nlm.nih.gov
Phenotypic data are critical for understanding biological mechanisms and consequences of
genomic variation, and are pivotal for clinical use cases such as disease diagnostics and …