The rice genome revolution: from an ancient grain to Green Super Rice

RA Wing, MD Purugganan, Q Zhang - Nature Reviews Genetics, 2018 - nature.com
Rice is a staple crop for half the world's population, which is expected to grow by 3 billion
over the next 30 years. It is also a key model for studying the genomics of agroecosystems …

The WRKY transcription factor family in model plants and crops

F Chen, Y Hu, A Vannozzi, K Wu, H Cai… - Critical Reviews in …, 2017 - Taylor & Francis
The WRKY gene family in flowering plants encodes a large group of transcription factors
(TFs) that play essential roles in diverse stress responses, developmental, and physiological …

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

W Wang, R Mauleon, Z Hu, D Chebotarov, S Tai, Z Wu… - Nature, 2018 - nature.com
Here we analyse genetic variation, population structure and diversity among 3,010 diverse
Asian cultivated rice (Oryza sativa L.) genomes from the 3,000 Rice Genomes Project. Our …

Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice

Q Zhao, Q Feng, H Lu, Y Li, A Wang, Q Tian, Q Zhan… - Nature …, 2018 - nature.com
The rich genetic diversity in Oryza sativa and Oryza rufipogon serves as the main sources in
rice breeding. Large-scale resequencing has been undertaken to discover allelic variants in …

1,135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana

C Alonso-Blanco, J Andrade, C Becker, F Bemm… - Cell, 2016 - cell.com
Arabidopsis thaliana serves as a model organism for the study of fundamental physiological,
cellular, and molecular processes. It has also greatly advanced our understanding of …

On the road to breeding 4.0: unraveling the good, the bad, and the boring of crop quantitative genomics

JG Wallace, E Rodgers-Melnick… - Annual review of …, 2018 - annualreviews.org
Understanding the quantitative genetics of crops has been and will continue to be central to
maintaining and improving global food security. We outline four stages that plant breeding …

Back to the future: revisiting MAS as a tool for modern plant breeding

JN Cobb, PS Biswas, JD Platten - Theoretical and Applied Genetics, 2019 - Springer
Key message New models for integration of major gene MAS with modern breeding
approaches stand to greatly enhance the reliability and efficiency of breeding, facilitating the …

The 3,000 rice genomes project: new opportunities and challenges for future rice research

JY Li, J Wang, RS Zeigler - Gigascience, 2014 - academic.oup.com
Rice is the world's most important staple grown by millions of small-holder farmers.
Sustaining rice production relies on the intelligent use of rice diversity. The 3,000 Rice …

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research

MK Tello-Ruiz, S Naithani, P Gupta… - Nucleic Acids …, 2021 - academic.oup.com
Abstract Gramene (http://www. gramene. org), a knowledgebase founded on comparative
functional analyses of genomic and pathway data for model plants and major crops …

Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses

Z Liang, S Duan, J Sheng, S Zhu, X Ni, J Shao… - Nature …, 2019 - nature.com
Understanding the Vitis species at the genomic level is important for cultivar improvement of
grapevine. Here we report whole-genome genetic variation at single-base resolution of 472 …