An overview of deep generative models in functional and evolutionary genomics

B Yelmen, F Jay - Annual Review of Biomedical Data Science, 2023 - annualreviews.org
Following the widespread use of deep learning for genomics, deep generative modeling is
also becoming a viable methodology for the broad field. Deep generative models (DGMs) …

Federated quanvolutional neural network: a new paradigm for collaborative quantum learning

AS Bhatia, S Kais, MA Alam - Quantum Science and Technology, 2023 - iopscience.iop.org
In recent years, the concept of federated machine learning has been actively driven by
scientists to ease the privacy concerns of data owners. Currently, the combination of …

Genomic privacy preservation in genome-wide association studies: taxonomy, limitations, challenges, and vision

N Aherrahrou, H Tairi, Z Aherrahrou - Briefings in Bioinformatics, 2024 - academic.oup.com
Genome-wide association studies (GWAS) serve as a crucial tool for identifying genetic
factors associated with specific traits. However, ethical constraints prevent the direct …

Genome interpretation in a federated learning context allows the multi-center exome-based risk prediction of Crohn's disease patients

D Raimondi, H Chizari, N Verplaetse, BS Löscher… - Scientific Reports, 2023 - nature.com
High-throughput sequencing allowed the discovery of many disease variants, but nowadays
it is becoming clear that the abundance of genomics data mostly just moved the bottleneck …

Elastic optimization for stragglers in edge federated learning

K Sultana, K Ahmed, B Gu… - Big Data Mining and …, 2023 - ieeexplore.ieee.org
To fully exploit enormous data generated by intelligent devices in edge computing, edge
federated learning (EFL) is envisioned as a promising solution. The distributed collaborative …

[图书][B] Cybersecurity of Genomic Data

R Pulivarti, R Pulivarti, N Martin, FR Byers, J Wagner… - 2023 - csrc.nist.rip
Genomic data has enabled the rapid growth of the US bioeconomy and is valuable to the
individual, industry, and government because it has multiple intrinsic properties that in …

[HTML][HTML] Efficient federated kinship relationship identification

X Wang, L Dervishi, W Li, X Jiang… - AMIA Summits on …, 2023 - ncbi.nlm.nih.gov
Kinship relationship estimation plays a significant role in today's genome studies. Since
genetic data are mostly stored and protected in different silos, retrieving the desirable …

A Comprehensive Review of Artificial Intelligence and Machine Learning Methods for Modern Healthcare Systems

KM Ahmed, B Chandra Das, Y Saadati… - … Machine Learning and …, 2024 - Springer
Abstract Artificial Intelligence (AI) and Machine Learning (ML) methods have been applied
significantly in modern healthcare systems in the last few years. AI and its subfields, such as …

Free Lunch for Privacy Preserving Distributed Graph Learning

N Agrawal, N Malik, S Kumar - arXiv preprint arXiv:2305.10869, 2023 - arxiv.org
Learning on graphs is becoming prevalent in a wide range of applications including social
networks, robotics, communication, medicine, etc. These datasets belonging to entities often …

FedDP: Secure Federated Learning for Disease Prediction with Imbalanced Genetic Data

B Li, H Gao, X Shi - bioRxiv, 2023 - biorxiv.org
It is challenging to share and aggregate biomedical data distributed among multiple
institutions or computing resources due to various concerns including data privacy, security …