Bacterial and fungal diversity in the lorandite (TlAsS2) mine 'Allchar' in the Republic of North Macedonia

V Taleski, I Dimkić, B Boev, I Boev… - FEMS Microbiology …, 2020 - academic.oup.com
The Allchar mineral mine is one of the oldest arsenic–antimony mines in the Republic of
North Macedonia. The mine is a well-known reservoir of the worldwide purest source of the …

Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads

S Nazeen, YW Yu, B Berger - Genome biology, 2020 - Springer
Microbial populations exhibit functional changes in response to different ambient
environments. Although whole metagenome sequencing promises enough raw data to study …

Diversity and functions of microbes in surface sediments under heavy metal pollution of western Chaohu Lake

Z Shen, F Wang, Y Liang, Y Li, Q Liu… - Letters in Applied …, 2022 - academic.oup.com
Heavy metal pollution is a global concern. Targeting at the surface sediments in western
Chaohu Lake and using metagenome sequencing, we probed into the mechanism of how …

Understanding Plankton Community in the Post-mining Lake of Paringin District for Environmental and Reclamation Assessment

R Ikhsan, NK Sari, AG Fahmi, D Triwibowo, H Habibie… - Pollution, 2024 - jpoll.ut.ac.ir
Paringin District is one of the coal mining areas in South Kalimantan with the exploitation
method of open pit mining. This activity opens rock layers containing sulfur, reacting with …

Metagenomic insights unveil the dominance of undescribed Actinobacteria in pond ecosystem of an Indian shrine

R Manikkam, M Imchen, M Kaari, V Angamuthu… - Meta Gene, 2020 - Elsevier
Actinobacteria have been an excellent source of novel antibiotics for several decades.
However, their community remains unexplored in the pond sediments. The metagenomic …

Carnelian: alignment-free functional binning and abundance estimation of metagenomic reads

S Nazeen, B Berger - bioRxiv, 2018 - biorxiv.org
Accurate assignment of metagenomic reads to their functional roles is an important first step
towards gaining insights into the relationship between the human microbiomeincluding the …

Computational methods for functional interpretation of diverse omics data

S Nazeen - 2019 - dspace.mit.edu
Recent technological advances have resulted in an explosive growth of various types of"
omics" data, including genomic, transcriptomic, proteomic, and metagenomic data …

Discovery and characterization of functional RNAs through in vitro selection and next generation sequencing

BT Ho - 2017 - escholarship.org
Biochemical properties of ribonucleic acids enable their instrumentality in physiological
functions. RNA sequence serves as the intermediary of the genetic code, while secondary …