Named entity recognition and relation detection for biomedical information extraction

N Perera, M Dehmer, F Emmert-Streib - Frontiers in cell and …, 2020 - frontiersin.org
The number of scientific publications in the literature is steadily growing, containing our
knowledge in the biomedical, health, and clinical sciences. Since there is currently no …

[HTML][HTML] Neural network-based approaches for biomedical relation classification: a review

Y Zhang, H Lin, Z Yang, J Wang, Y Sun, B Xu… - Journal of biomedical …, 2019 - Elsevier
The explosive growth of biomedical literature has created a rich source of knowledge, such
as that on protein-protein interactions (PPIs) and drug-drug interactions (DDIs), locked in …

Reasoning with latent structure refinement for document-level relation extraction

G Nan, Z Guo, I Sekulić, W Lu - arXiv preprint arXiv:2005.06312, 2020 - arxiv.org
Document-level relation extraction requires integrating information within and across
multiple sentences of a document and capturing complex interactions between inter …

Entity structure within and throughout: Modeling mention dependencies for document-level relation extraction

B Xu, Q Wang, Y Lyu, Y Zhu, Z Mao - … of the AAAI conference on artificial …, 2021 - ojs.aaai.org
Abstract Entities, as the essential elements in relation extraction tasks, exhibit certain
structure. In this work, we formulate such entity structure as distinctive dependencies …

Connecting the dots: Document-level neural relation extraction with edge-oriented graphs

F Christopoulou, M Miwa, S Ananiadou - arXiv preprint arXiv:1909.00228, 2019 - arxiv.org
Document-level relation extraction is a complex human process that requires logical
inference to extract relationships between named entities in text. Existing approaches use …

Global-to-local neural networks for document-level relation extraction

D Wang, W Hu, E Cao, W Sun - arXiv preprint arXiv:2009.10359, 2020 - arxiv.org
Relation extraction (RE) aims to identify the semantic relations between named entities in
text. Recent years have witnessed it raised to the document level, which requires complex …

Biomedical relation extraction via knowledge-enhanced reading comprehension

J Chen, B Hu, W Peng, Q Chen, B Tang - BMC bioinformatics, 2022 - Springer
Background In biomedical research, chemical and disease relation extraction from
unstructured biomedical literature is an essential task. Effective context understanding and …

[HTML][HTML] Character level and word level embedding with bidirectional LSTM–Dynamic recurrent neural network for biomedical named entity recognition from literature

S Gajendran, D Manjula, V Sugumaran - Journal of Biomedical Informatics, 2020 - Elsevier
Abstract Named Entity Recognition is the process of identifying different entities in a given
context. Biomedical Named Entity Recognition (BNER) is the task of extracting chemical …

Convolution neural network for text mining and natural language processing

NI Widiastuti - IOP Conference Series: Materials Science and …, 2019 - iopscience.iop.org
The objective of this study is to get an overview of the improvements applied in a number of
studies and problems that have not been resolved. We have surveyed more than 30 …

[HTML][HTML] Triple Pseudo-Siamese network with hybrid attention mechanism for welding defect detection

Z Li, H Chen, X Ma, H Chen, Z Ma - Materials & Design, 2022 - Elsevier
Most of the existing methods neglect their complementary relation and only use welding
pool images to detect welding defects. Therefore, a new triple pseudo-siamese network to …