Tutorial: guidance for quantitative confocal microscopy

J Jonkman, CM Brown, GD Wright, KI Anderson… - Nature protocols, 2020 - nature.com
When used appropriately, a confocal fluorescence microscope is an excellent tool for
making quantitative measurements in cells and tissues. The confocal microscope's ability to …

Single particle tracking: from theory to biophysical applications

H Shen, LJ Tauzin, R Baiyasi, W Wang… - Chemical …, 2017 - ACS Publications
After three decades of developments, single particle tracking (SPT) has become a powerful
tool to interrogate dynamics in a range of materials including live cells and novel catalytic …

Dynamic regulation of transcriptional states by chromatin and transcription factors

TC Voss, GL Hager - Nature Reviews Genetics, 2014 - nature.com
The interaction of regulatory proteins with the complex nucleoprotein structures that are
found in mammalian cells involves chromatin reorganization at multiple levels. Mechanisms …

Fast, background-free, 3D super-resolution optical fluctuation imaging (SOFI)

T Dertinger, R Colyer, G Iyer… - Proceedings of the …, 2009 - National Acad Sciences
Super-resolution optical microscopy is a rapidly evolving area of fluorescence microscopy
with a tremendous potential for impacting many fields of science. Several super-resolution …

Current capabilities and future perspectives of FCS: super-resolution microscopy, machine learning, and in vivo applications

J Sankaran, T Wohland - Communications Biology, 2023 - nature.com
Fluorescence correlation spectroscopy (FCS) is a single molecule sensitive tool for the
quantitative measurement of biomolecular dynamics and interactions. Improvements in …

Measuring and interpreting point spread functions to determine confocal microscope resolution and ensure quality control

RW Cole, T Jinadasa, CM Brown - Nature protocols, 2011 - nature.com
This protocol outlines a procedure for collecting and analyzing point spread functions
(PSFs). It describes how to prepare fluorescent microsphere samples, set up a confocal …

Live-cell microscopy–tips and tools

MM Frigault, J Lacoste, JL Swift… - Journal of cell …, 2009 - journals.biologists.com
Imaging of living cells and tissue is now common in many fields of the life and physical
sciences, and is instrumental in revealing a great deal about cellular dynamics and function …

Kinetic competition during the transcription cycle results in stochastic RNA processing

A Coulon, ML Ferguson, V de Turris, M Palangat… - Elife, 2014 - elifesciences.org
Synthesis of mRNA in eukaryotes involves the coordinated action of many enzymatic
processes, including initiation, elongation, splicing, and cleavage. Kinetic competition …

The BrightEyes-TTM as an open-source time-tagging module for democratising single-photon microscopy

A Rossetta, E Slenders, M Donato, S Zappone… - Nature …, 2022 - nature.com
Fluorescence laser-scanning microscopy (LSM) is experiencing a revolution thanks to new
single-photon (SP) array detectors, which give access to an entirely new set of single-photon …

Lessons in fluctuation correlation spectroscopy

MA Digman, E Gratton - Annual review of physical chemistry, 2011 - annualreviews.org
Molecular diffusion and transport processes are fundamental in physical, chemical, and
biological systems. Current approaches to measuring molecular transport in cells and …