Fluxomics–connecting 'omics analysis and phenotypes

G Winter, JO Krömer - Environmental microbiology, 2013 - Wiley Online Library
In our modern 'omics era, metabolic flux analysis (fluxomics) represents the physiological
counterpart of its siblings transcriptomics, proteomics and metabolomics. Fluxomics …

Flux analysis and metabolomics for systematic metabolic engineering of microorganisms

Y Toya, H Shimizu - Biotechnology advances, 2013 - Elsevier
Rational engineering of metabolism is important for bio-production using microorganisms.
Metabolic design based on in silico simulations and experimental validation of the metabolic …

Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation

DN Macklin, TA Ahn-Horst, H Choi, NA Ruggero… - Science, 2020 - science.org
INTRODUCTION The generation of biological data is presenting us with one of the most
demanding analysis challenges the world has ever faced, not only in terms of storage and …

Metabolic engineering of Escherichia coli using CRISPR–Cas9 meditated genome editing

Y Li, Z Lin, C Huang, Y Zhang, Z Wang, Y Tang… - Metabolic …, 2015 - Elsevier
Engineering cellular metabolism for improved production of valuable chemicals requires
extensive modulation of bacterial genome to explore complex genetic spaces. Here, we …

Model-based metabolic engineering enables high yield itaconic acid production by Escherichia coli

BJ Harder, K Bettenbrock, S Klamt - Metabolic engineering, 2016 - Elsevier
Itaconic acid is a high potential platform chemical which is currently industrially produced by
Aspergillus terreus. Heterologous production of itaconic acid with Escherichia coli could …

Expression of heterologous non-oxidative pentose phosphate pathway from Bacillus methanolicus and phosphoglucose isomerase deletion improves methanol …

RK Bennett, JE Gonzalez, WB Whitaker… - Metabolic …, 2018 - Elsevier
Synthetic methylotrophy aims to develop non-native methylotrophic microorganisms to
utilize methane or methanol to produce chemicals and biofuels. We report two …

Metabolic flux analysis: a comprehensive review on sample preparation, analytical techniques, data analysis, computational modelling, and main application areas

B de Falco, F Giannino, F Carteni, S Mazzoleni… - RSC …, 2022 - pubs.rsc.org
Metabolic flux analysis (MFA) quantitatively describes cellular fluxes to understand
metabolic phenotypes and functional behaviour after environmental and/or genetic …

Metabolic engineering of Escherichia coli for the production of riboflavin

Z Lin, Z Xu, Y Li, Z Wang, T Chen, X Zhao - Microbial cell factories, 2014 - Springer
Abstract Background Riboflavin (vitamin B 2), the precursor of the flavin cofactors flavin
mononucleotide (FMN) and flavin adenine dinucleotide (FAD), is used commercially as an …

Metabolic Engineering of Escherichia coli for the Production of Hyaluronic Acid From Glucose and Galactose

JE Woo, HJ Seong, SY Lee, YS Jang - Frontiers in bioengineering …, 2019 - frontiersin.org
Hyaluronic acid is a glycosaminoglycan biopolymer widely present throughout connective
and epithelial tissue, and has been of great interest for medical and cosmetic applications. In …

Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli

CP Long, JE Gonzalez, AM Feist… - Proceedings of the …, 2018 - National Acad Sciences
Unraveling the mechanisms of microbial adaptive evolution following genetic or
environmental challenges is of fundamental interest in biological science and engineering …