Generative models as an emerging paradigm in the chemical sciences

DM Anstine, O Isayev - Journal of the American Chemical Society, 2023 - ACS Publications
Traditional computational approaches to design chemical species are limited by the need to
compute properties for a vast number of candidates, eg, by discriminative modeling …

The transformational role of GPU computing and deep learning in drug discovery

M Pandey, M Fernandez, F Gentile, O Isayev… - Nature Machine …, 2022 - nature.com
Deep learning has disrupted nearly every field of research, including those of direct
importance to drug discovery, such as medicinal chemistry and pharmacology. This …

MolGPT: molecular generation using a transformer-decoder model

V Bagal, R Aggarwal, PK Vinod… - Journal of Chemical …, 2021 - ACS Publications
Application of deep learning techniques for de novo generation of molecules, termed as
inverse molecular design, has been gaining enormous traction in drug design. The …

AlphaFold accelerates artificial intelligence powered drug discovery: efficient discovery of a novel CDK20 small molecule inhibitor

F Ren, X Ding, M Zheng, M Korzinkin, X Cai, W Zhu… - Chemical …, 2023 - pubs.rsc.org
The application of artificial intelligence (AI) has been considered a revolutionary change in
drug discovery and development. In 2020, the AlphaFold computer program predicted …

Deep learning enables rapid identification of potent DDR1 kinase inhibitors

A Zhavoronkov, YA Ivanenkov, A Aliper… - Nature …, 2019 - nature.com
We have developed a deep generative model, generative tensorial reinforcement learning
(GENTRL), for de novo small-molecule design. GENTRL optimizes synthetic feasibility …

Concepts of artificial intelligence for computer-assisted drug discovery

X Yang, Y Wang, R Byrne, G Schneider… - Chemical …, 2019 - ACS Publications
Artificial intelligence (AI), and, in particular, deep learning as a subcategory of AI, provides
opportunities for the discovery and development of innovative drugs. Various machine …

Advances in de novo drug design: from conventional to machine learning methods

VD Mouchlis, A Afantitis, A Serra, M Fratello… - International journal of …, 2021 - mdpi.com
De novo drug design is a computational approach that generates novel molecular structures
from atomic building blocks with no a priori relationships. Conventional methods include …

GuacaMol: benchmarking models for de novo molecular design

N Brown, M Fiscato, MHS Segler… - Journal of chemical …, 2019 - ACS Publications
De novo design seeks to generate molecules with required property profiles by virtual
design-make-test cycles. With the emergence of deep learning and neural generative …

Multi-constraint molecular generation based on conditional transformer, knowledge distillation and reinforcement learning

J Wang, CY Hsieh, M Wang, X Wang, Z Wu… - Nature Machine …, 2021 - nature.com
Abstract Machine learning-based generative models can generate novel molecules with
desirable physiochemical and pharmacological properties from scratch. Many excellent …

Deep learning for molecular design—a review of the state of the art

DC Elton, Z Boukouvalas, MD Fuge… - … Systems Design & …, 2019 - pubs.rsc.org
In the space of only a few years, deep generative modeling has revolutionized how we think
of artificial creativity, yielding autonomous systems which produce original images, music …