Research advances in the genomics and applications for molecular breeding of aquaculture animals

X You, X Shan, Q Shi - Aquaculture, 2020 - Elsevier
High-throughput sequencing technologies have been extensively applied to genetics and
breeding in the aquaculture industry. To date, many aquaculture animal genomes have …

High-quality wild barley genome assemblies and annotation with Nanopore long reads and Hi-C sequencing data

R Pan, H Hu, Y Xiao, L Xu, Y Xu, K Ouyang, C Li, T He… - Scientific data, 2023 - nature.com
Abstract Wild barley, from “Evolution Canyon (EC)” in Mount Carmel, Israel, are ideal models
for cereal chromosome evolution studies. Here, the wild barley EC_S1 is from the south …

Improved contiguity of the threespine stickleback genome using long-read sequencing

S Nath, DE Shaw, MA White - G3, 2021 - academic.oup.com
While the cost and time for assembling a genome has drastically decreased, it still remains a
challenge to assemble a highly contiguous genome. These challenges are rapidly being …

Telomere-to-telomere assembly of a fish Y chromosome reveals the origin of a young sex chromosome pair

L Xue, Y Gao, M Wu, T Tian, H Fan, Y Huang, Z Huang… - Genome biology, 2021 - Springer
Background The origin of sex chromosomes requires the establishment of recombination
suppression between the proto-sex chromosomes. In many fish species, the sex …

Chromosomal genome and population genetic analyses to reveal genetic architecture, breeding history and genes related to cadmium accumulation in Lentinula …

H Yu, L Zhang, X Shang, B Peng, Y Li, S Xiao, Q Tan… - BMC genomics, 2022 - Springer
Abstract Background Lentinula edodes (Berk.) is the second most productive mushroom in
the world. It contains compounds effective for antiviral, antitumor, antioxidant and immune …

Affinity Purification and Molecular Characterization of Angiotensin-Converting Enzyme (ACE)-Inhibitory Peptides from Takifugu flavidus

Y Su, S Chen, S Liu, Y Wang, X Chen, M Xu, S Cai… - Marine Drugs, 2023 - mdpi.com
An affinity chromatography filler of CNBr-activated Sepharose 4B-immobilized ACE was
used to purify ACE-inhibitory peptides from Takifugu flavidus protein hydrolysate (< 1 kDa) …

Chromosome-level haplotype-resolved genome assembly for Takifugu ocellatus using PacBio and Hi-C technologies

Q Zeng, Z Zhou, Q He, L Li, F Pu, M Yan, P Xu - Scientific Data, 2023 - nature.com
Takifugu species serve as a model system for evolutionary studies due to their compact
genomes and diverse phenotypes. The ocellated puffer (Takifugu ocellatus), characterized …

A high-quality blue whale genome, segmental duplications, and historical demography

YV Bukhman, PA Morin, S Meyer, LF Chu… - Molecular Biology …, 2024 - academic.oup.com
The blue whale, Balaenoptera musculus, is the largest animal known to have ever existed,
making it an important case study in longevity and resistance to cancer. To further this and …

Chromosomal‐level assembly of Takifugu obscurus (Abe, 1949) genome using third‐generation DNA sequencing and Hi‐C analysis

S Kang, JH Kim, E Jo, SJ Lee, J Jung… - Molecular Ecology …, 2020 - Wiley Online Library
The Tetraodontidae family are known to have relatively small and compact genomes
compared to other vertebrates. The obscure puffer fish Takifugu obscurus is an anadromous …

New algorithms for accurate and efficient de novo genome assembly from long DNA sequencing reads

L Gonzalez-Garcia… - Life Science …, 2023 - life-science-alliance.org
Building de novo genome assemblies for complex genomes is possible thanks to long-read
DNA sequencing technologies. However, maximizing the quality of assemblies based on …