Routes and rates of bacterial dispersal impact surface soil microbiome composition and functioning

KE Walters, JK Capocchi, MBN Albright, Z Hao… - The ISME …, 2022 - academic.oup.com
Recent evidence suggests that, similar to larger organisms, dispersal is a key driver of
microbiome assembly; however, our understanding of the rates and taxonomic composition …

When FLOW-FISH met FACS: Combining multiparametric, dynamic approaches for microbial single-cell research in the total environment

AC Pereira, A Tenreiro, MV Cunha - Science of the Total Environment, 2022 - Elsevier
In environmental microbiology, the ability to assess, in a high-throughput way, single-cells
within microbial communities is key to understand their heterogeneity. Fluorescence in situ …

[HTML][HTML] A critical perspective on interpreting amplicon sequencing data in soil ecological research

LV Alteio, J Séneca, A Canarini, R Angel… - Soil Biology and …, 2021 - Elsevier
Microbial community analysis via marker gene amplicon sequencing has become a routine
method in the field of soil research. In this perspective, we discuss technical challenges and …

Investigating eco-evolutionary processes of microbial community assembly in the wild using a model leaf litter system

KM Barbour, JBH Martiny - The ISME Journal, 2024 - academic.oup.com
Microbial communities are not the easiest to manipulate experimentally in natural
ecosystems. However, leaf litter—topmost layer of surface soil—is uniquely suitable to …

Revisiting soil bacterial counting methods: optimal soil storage and pretreatment methods and comparison of culture-dependent and-independent methods

J Lee, HS Kim, HY Jo, MJ Kwon - PLoS One, 2021 - journals.plos.org
Although a number of different methods have been used to quantify soil bacteria, identifying
the optimal method (s) for soil bacterial abundance is still in question. No single method …

Universal microbial reworking of dissolved organic matter along environmental gradients

EC Freeman, EJS Emilson, T Dittmar… - Nature …, 2024 - nature.com
Soils are losing increasing amounts of carbon annually to freshwaters as dissolved organic
matter (DOM), which, if degraded, can offset their carbon sink capacity. However, the …

[HTML][HTML] Phospholipid fatty acid (PLFA) analysis as a tool to estimate absolute abundances from compositional 16S rRNA bacterial metabarcoding data

N Lewe, S Hermans, G Lear, LT Kelly… - Journal of …, 2021 - Elsevier
Microbial biodiversity monitoring through the analysis of DNA extracted from environmental
samples is increasingly popular because it is perceived as being rapid, cost-effective, and …

Water temperature and organic carbon control spatio‐temporal dynamics of particle‐attached and free‐living bacterial communities in a hypereutrophic urban river …

X Cai, L Yao, Y Hu, S Wang, Z Wang… - Freshwater …, 2023 - Wiley Online Library
Bacteria are an important component of the aquatic ecosystem playing a key role in the
transformation and mineralisation of allochthonous organic matter, nutrients and pollutants …

Dietary sphinganine is selectively assimilated by members of the mammalian gut microbiome

MT Lee, HH Le, EL Johnson - Journal of lipid research, 2021 - ASBMB
Functions of the gut microbiome have a growing number of implications for host metabolic
health, with diet being one of the most significant influences on microbiome composition …

Testing the contribution of dispersal to microbial succession following a wildfire

KM Barbour, C Weihe, KE Walters, JBH Martiny - Msystems, 2023 - Am Soc Microbiol
Given increased wildfire activity, there is growing interest in understanding the drivers of
microbial succession after fire. Dispersal may be especially important to post-fire succession …