Understanding the interaction of polyelectrolyte architectures with proteins and biosystems

K Achazi, R Haag, M Ballauff… - Angewandte Chemie …, 2021 - Wiley Online Library
The counterions neutralizing the charges on polyelectrolytes such as DNA or heparin may
dissociate in water and greatly influence the interaction of such polyelectrolytes with …

Applications of isothermal titration calorimetry in pure and applied research—survey of the literature from 2010

R Ghai, RJ Falconer, BM Collins - Journal of Molecular …, 2012 - Wiley Online Library
Isothermal titration calorimetry (ITC) is a biophysical technique for measuring the formation
and dissociation of molecular complexes and has become an invaluable tool in many …

A loop‐based and AGO‐Incorporated virtual screening model targeting AGO‐Mediated miRNA–mRNA interactions for drug discovery to rescue bone phenotype in …

Z Zhuo, Y Wan, D Guan, S Ni, L Wang… - Advanced …, 2020 - Wiley Online Library
Several virtual screening models are proposed to screen small molecules only targeting
primary miRNAs without selectivity. Few attempts have been made to develop virtual …

Exposing hidden high-affinity RNA conformational states

NI Orlovsky, HM Al-Hashimi, TG Oas - Journal of the American …, 2019 - ACS Publications
RNA recognition frequently results in conformational changes that optimize intermolecular
binding. As a consequence, the overall binding affinity of RNA to its binding partners …

Biochemical methods to investigate lncRNA and the influence of lncRNA: protein complexes on chromatin

EJ McFadden, AE Hargrove - Biochemistry, 2016 - ACS Publications
Long noncoding RNAs (lncRNAs), defined as nontranslated transcripts greater than 200
nucleotides in length, are often differentially expressed throughout developmental stages …

Deciphering the Thermodynamic Landscape of CRISPR/Cas9: Insights into Enhancing Gene Editing Precision and Efficiency

A Kumar, P Daripa, K Rasool… - The Journal of …, 2024 - ACS Publications
The thermodynamic landscape of the CRISPR/Cas9 system plays a crucial role in
understanding and optimizing the performance of this revolutionary genome-editing …

Click dimers to target HIV TAR RNA conformation

S Kumar, P Kellish, WE Robinson Jr, D Wang… - Biochemistry, 2012 - ACS Publications
A series of neomycin dimers have been synthesized using “click chemistry” with varying
functionality and length in the linker region to target the human immunodeficiency virus type …

Native mass spectrometry reveals the initial binding events of HIV-1 rev to RRE stem II RNA

EM Schneeberger, M Halper, M Palasser… - Nature …, 2020 - nature.com
Nuclear export complexes composed of rev response element (RRE) ribonucleic acid (RNA)
and multiple molecules of rev protein are promising targets for the development of …

α‐Helix‐Mimetic Foldamers for Targeting HIV‐1 TAR RNA

D Maity, S Kumar, F Curreli, AK Debnath… - … A European Journal, 2019 - Wiley Online Library
An oligopyridylamide‐based foldamer approach has been employed to target HIV TAR RNA‐
TAT assembly as a model system to study RNA‐protein interactions. The oligopyridylamide …

Toward a mechanistic understanding of ionic self-complementary peptide self-assembly: role of water molecules and ions

M Kabiri, I Bushnak, MT McDermot… - …, 2013 - ACS Publications
Ionic self-complementary peptides are considered an important class of self-assembling
peptides. In particular, RADARADARADARADA (RADA4) is well-known to form a relatively …