Methods and approaches in the topology-based analysis of biological pathways

C Mitrea, Z Taghavi, B Bokanizad, S Hanoudi… - Frontiers in …, 2013 - frontiersin.org
The goal of pathway analysis is to identify the pathways significantly impacted in a given
phenotype. Many current methods are based on algorithms that consider pathways as …

A survey of link recommendation for social networks: Methods, theoretical foundations, and future research directions

Z Li, X Fang, ORL Sheng - ACM Transactions on Management …, 2017 - dl.acm.org
Link recommendation has attracted significant attention from both industry practitioners and
academic researchers. In industry, link recommendation has become a standard and most …

Evaluating link prediction methods

Y Yang, RN Lichtenwalter, NV Chawla - Knowledge and Information …, 2015 - Springer
Link prediction is a popular research area with important applications in a variety of
disciplines, including biology, social science, security, and medicine. The fundamental …

Clustering attributed graphs: models, measures and methods

C Bothorel, JD Cruz, M Magnani, B Micenkova - Network Science, 2015 - cambridge.org
Clustering a graph, ie, assigning its nodes to groups, is an important operation whose best
known application is the discovery of communities in social networks. Graph clustering and …

EnrichNet: network-based gene set enrichment analysis

E Glaab, A Baudot, N Krasnogor, R Schneider… - …, 2012 - academic.oup.com
Motivation: Assessing functional associations between an experimentally derived gene or
protein set of interest and a database of known gene/protein sets is a common task in the …

A survey on privacy in social media: Identification, mitigation, and applications

G Beigi, H Liu - ACM Transactions on Data Science, 2020 - dl.acm.org
The increasing popularity of social media has attracted a huge number of people to
participate in numerous activities on a daily basis. This results in tremendous amounts of …

Joint link prediction and attribute inference using a social-attribute network

NZ Gong, A Talwalkar, L Mackey, L Huang… - ACM Transactions on …, 2014 - dl.acm.org
The effects of social influence and homophily suggest that both network structure and node-
attribute information should inform the tasks of link prediction and node-attribute inference …

Geo-friends recommendation in gps-based cyber-physical social network

X Yu, A Pan, LA Tang, Z Li, J Han - … International Conference on …, 2011 - ieeexplore.ieee.org
The popularization of GPS-enabled mobile devices provides social network researchers a
taste of cyber-physical social network in advance. Traditional link prediction methods are …

Optimizing generalized pagerank methods for seed-expansion community detection

P Li, I Chien, O Milenkovic - Advances in Neural …, 2019 - proceedings.neurips.cc
Landing probabilities (LP) of random walks (RW) over graphs encode rich information
regarding graph topology. Generalized PageRanks (GPR), which represent weighted sums …

Preference dynamics with multimodal user-item interactions in social media recommendation

D Rafailidis, P Kefalas, Y Manolopoulos - Expert Systems with Applications, 2017 - Elsevier
Recommender systems elicit the interests and preferences of individuals and make
recommendations accordingly, a main challenge for expert and intelligent systems. An …