Genomic selection and its research progress in aquaculture breeding

H Song, T Dong, X Yan, W Wang, Z Tian… - Reviews in …, 2023 - Wiley Online Library
Since its introduction in 2001, genomic selection (GS) has progressed rapidly. As a research
and application hot topic, GS has led to a revolution in the field of animal and plant breeding …

Genome‐wide association and genomic selection in aquaculture

JM Yanez, A Barria, ME Lopez, T Moen… - Reviews in …, 2023 - Wiley Online Library
Recent advancements in genomic technologies have led to the discovery and application of
DNA‐markers [eg single nucleotide polymorphisms (SNPs)] for the genetic improvement of …

Application of high-dimensional feature selection: evaluation for genomic prediction in man

ML Bermingham, R Pong-Wong, A Spiliopoulou… - Scientific reports, 2015 - nature.com
In this study, we investigated the effect of five feature selection approaches on the
performance of a mixed model (G-BLUP) and a Bayesian (Bayes C) prediction method. We …

Genomewide association analyses of lactation persistency and milk production traits in Holstein cattle based on imputed whole-genome sequence data

VB Pedrosa, FS Schenkel, SY Chen, HR Oliveira… - Genes, 2021 - mdpi.com
Lactation persistency and milk production are among the most economically important traits
in the dairy industry. In this study, we explored the association of over 6.1 million imputed …

Selecting sequence variants to improve genomic predictions for dairy cattle

PM VanRaden, ME Tooker, JR O'connell… - Genetics Selection …, 2017 - Springer
Background Millions of genetic variants have been identified by population-scale
sequencing projects, but subsets of these variants are needed for routine genomic …

Sequence-vs. chip-assisted genomic selection: accurate biological information is advised

M Pérez-Enciso, JC Rincón, A Legarra - Genetics Selection Evolution, 2015 - Springer
Background The development of next-generation sequencing technologies (NGS) has made
the use of whole-genome sequence data for routine genetic evaluations possible, which has …

Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle

R Van Binsbergen, MPL Calus, MCAM Bink… - Genetics Selection …, 2015 - Springer
Background In contrast to currently used single nucleotide polymorphism (SNP) panels, the
use of whole-genome sequence data is expected to enable the direct estimation of the …

Using imputation-based whole-genome sequencing data to improve the accuracy of genomic prediction for combined populations in pigs

H Song, S Ye, Y Jiang, Z Zhang, Q Zhang… - Genetics Selection …, 2019 - Springer
Background For genomic selection in populations with a small reference population,
combining populations of the same breed or populations of related breeds is an effective …

Haplotype blocks for genomic prediction: a comparative evaluation in multiple crop datasets

SE Weber, M Frisch, RJ Snowdon… - Frontiers in Plant …, 2023 - frontiersin.org
In modern plant breeding, genomic selection is becoming the gold standard for selection of
superior genotypes. The basis for genomic prediction models is a set of phenotyped lines …

Genomic prediction with whole-genome sequence data in intensely selected pig lines

R Ros-Freixedes, M Johnsson, A Whalen… - Genetics Selection …, 2022 - Springer
Background Early simulations indicated that whole-genome sequence data (WGS) could
improve the accuracy of genomic predictions within and across breeds. However, empirical …