STaRRRT: a table of short tandem repeats in regulatory regions of the human genome

KA Bolton, JP Ross, DM Grice, NA Bowden… - BMC genomics, 2013 - Springer
Abstract Background Tandem repeats (TRs) are unstable regions commonly found within
genomes that have consequences for evolution and disease. In humans, polymorphic TRs …

Abundance, arrangement, and function of sequence motifs in the chicken promoters

H Abe, NJ Gemmell - BMC genomics, 2014 - Springer
Background Eukaryotic promoters are regions containing various sequence motifs
necessary to control gene transcription. Much evidence has emerged showing that structural …

CAGm: a repository of germline microsatellite variations in the 1000 genomes project

N Kinney, K Titus-Glover, JD Wren… - Nucleic acids …, 2019 - academic.oup.com
The human genome harbors an abundance of repetitive DNA; however, its function
continues to be debated. Microsatellites—a class of short tandem repeat—are established …

Abundance of ethnically biased microsatellites in human gene regions

N Kinney, L Kang, L Eckstrand, A Pulenthiran… - PLoS …, 2019 - journals.plos.org
Microsatellites–a type of short tandem repeat (STR)–have been used for decades as
putatively neutral markers to study the genetic structure of diverse human populations …

ZDHHC3 as a Risk and Mortality Marker for Breast Cancer in African American Women

N Kinney, RT Varghese, R Anandakrishnan… - Cancer …, 2017 - journals.sagepub.com
African American woman are 43% more likely to die from breast cancer than white women
and have increased the risk of tumor recurrence despite lower incidence. We investigate …

Germline microsatellite genotypes differentiate children with medulloblastoma

S Rivero-Hinojosa, N Kinney, HR Garner… - Neuro …, 2020 - academic.oup.com
Background The germline genetic events underpinning medulloblastoma (MB) initiation,
and therefore the ability to determine who is at risk, are still unknown for the majority of …

A polymorphic repeat in the IGF1 promoter influences the risk of endometrial cancer

KA Bolton, KA Avery-Kiejda, EG Holliday… - Endocrine …, 2016 - ec.bioscientifica.com
Due to the lack of high-throughput genetic assays for tandem repeats, there is a paucity of
knowledge about the role they may play in disease. A polymorphic CA repeat in the …