Gene retention, fractionation and subgenome differences in polyploid plants
All natural plant species are evolved from ancient polyploids. Polyloidization plays an
important role in plant genome evolution, species divergence and crop domestication. We …
important role in plant genome evolution, species divergence and crop domestication. We …
Three-dimensional chromatin packing and positioning of plant genomes
ES Doğan, C Liu - Nature plants, 2018 - nature.com
Abstract Information and function of a genome are not only decorated with epigenetic marks
in the linear DNA sequence but also in their non-random spatial organization in the nucleus …
in the linear DNA sequence but also in their non-random spatial organization in the nucleus …
Polyploidy, the nucleotype, and novelty: the impact of genome doubling on the biology of the cell
Polyploidy is a key mechanism of genome evolution and speciation, particularly in plants.
Many aspects of polyploidy have been elucidated with the tools that have become available …
Many aspects of polyploidy have been elucidated with the tools that have become available …
Genome‐wide Hi‐C analysis reveals extensive hierarchical chromatin interactions in rice
The non‐random spatial packing of chromosomes in the nucleus plays a critical role in
orchestrating gene expression and genome function. Here, we present a Hi‐C analysis of …
orchestrating gene expression and genome function. Here, we present a Hi‐C analysis of …
Unraveling the 3D genome architecture in plants: present and future
The eukaryotic genome has a hierarchical three-dimensional (3D) organization with
functional implications for DNA replication, DNA repair, and transcriptional regulation. Over …
functional implications for DNA replication, DNA repair, and transcriptional regulation. Over …
Understanding 3D genome organization and its effect on transcriptional gene regulation under environmental stress in plant: a chromatin perspective
The genome of a eukaryotic organism is comprised of a supra-molecular complex of
chromatin fibers and intricately folded three-dimensional (3D) structures. Chromosomal …
chromatin fibers and intricately folded three-dimensional (3D) structures. Chromosomal …
3C and 3C-based techniques: the powerful tools for spatial genome organization deciphering
J Han, Z Zhang, K Wang - Molecular Cytogenetics, 2018 - Springer
It is well known that the chromosomes are organized in the nucleus and this spatial
arrangement of genome play a crucial role in gene regulation and genome stability. Different …
arrangement of genome play a crucial role in gene regulation and genome stability. Different …
Gene Balance Predicts Transcriptional Responses Immediately Following Ploidy Change in Arabidopsis thaliana
The gene balance hypothesis postulates that there is selection on gene copy number (gene
dosage) to preserve the stoichiometric balance among interacting proteins. This …
dosage) to preserve the stoichiometric balance among interacting proteins. This …
Biased gene retention during diploidization in Brassica linked to three-dimensional genome organization
T Xie, FG Zhang, HY Zhang, XT Wang, JH Hu, XM Wu - Nature plants, 2019 - nature.com
The non-random three-dimensional (3D) organization of the genome in the nucleus is
critical to gene regulation and genome function. Using high-throughput chromatin …
critical to gene regulation and genome function. Using high-throughput chromatin …
The 4D nucleome: genome compartmentalization in an evolutionary context
Abstract 4D nucleome research aims to understand the impact of nuclear organization in
space and time on nuclear functions, such as gene expression patterns, chromatin …
space and time on nuclear functions, such as gene expression patterns, chromatin …