A guide to genome engineering with programmable nucleases

H Kim, JS Kim - Nature Reviews Genetics, 2014 - nature.com
Programmable nucleases—including zinc-finger nucleases (ZFNs), transcription activator-
like effector nucleases (TALENs) and RNA-guided engineered nucleases (RGENs) derived …

Genome-editing technologies: principles and applications

T Gaj, SJ Sirk, S Shui, J Liu - Cold Spring Harbor …, 2016 - cshperspectives.cshlp.org
Targeted nucleases have provided researchers with the ability to manipulate virtually any
genomic sequence, enabling the facile creation of isogenic cell lines and animal models for …

Systematic comparison of CRISPR/Cas9 and RNAi screens for essential genes

DW Morgens, RM Deans, A Li, MC Bassik - Nature biotechnology, 2016 - nature.com
We compared the ability of short hairpin RNA (shRNA) and CRISPR/Cas9 screens to identify
essential genes in the human chronic myelogenous leukemia cell line K562. We found that …

Genome-scale measurement of off-target activity using Cas9 toxicity in high-throughput screens

DW Morgens, M Wainberg, EA Boyle, O Ursu… - Nature …, 2017 - nature.com
CRISPR-Cas9 screens are powerful tools for high-throughput interrogation of genome
function, but can be confounded by nuclease-induced toxicity at both on-and off-target sites …

Small molecule–triggered Cas9 protein with improved genome-editing specificity

KM Davis, V Pattanayak, DB Thompson… - Nature chemical …, 2015 - nature.com
Directly modulating the activity of genome-editing proteins has the potential to increase their
specificity by reducing activity following target locus modification. We developed Cas9 …

Gene correction for SCID-X1 in long-term hematopoietic stem cells

M Pavel-Dinu, V Wiebking, BT Dejene, W Srifa… - Nature …, 2019 - nature.com
Gene correction in human long-term hematopoietic stem cells (LT-HSCs) could be an
effective therapy for monogenic diseases of the blood and immune system. Here we …

[HTML][HTML] Genome editing with mRNA encoding ZFN, TALEN, and Cas9

HX Zhang, Y Zhang, H Yin - Molecular Therapy, 2019 - cell.com
Genome-editing technologies based on programmable nucleases have significantly
broadened our ability to make precise and direct changes in the genomic DNA of various …

Meganucleases and other tools for targeted genome engineering: perspectives and challenges for gene therapy

G Silva, L Poirot, R Galetto, J Smith… - Current gene …, 2011 - ingentaconnect.com
The importance of safer approaches for gene therapy has been underscored by a series of
severe adverse events (SAEs) observed in patients involved in clinical trials for Severe …

Small-molecule hydrophobic tagging–induced degradation of HaloTag fusion proteins

TK Neklesa, HS Tae, AR Schneekloth… - Nature chemical …, 2011 - nature.com
The ability to regulate any protein of interest in living systems with small molecules remains
a challenge. We hypothesized that appending a hydrophobic moiety to the surface of a …

Targeted gene knockout by direct delivery of zinc-finger nuclease proteins

T Gaj, J Guo, Y Kato, SJ Sirk, CF Barbas III - Nature methods, 2012 - nature.com
Zinc-finger nucleases (ZFNs) are versatile reagents that have redefined genome
engineering. Realizing the full potential of this technology requires the development of safe …