Macromolecular crowding is more than hard-core repulsions

SL Speer, CJ Stewart, L Sapir… - Annual Review of …, 2022 - annualreviews.org
Cells are crowded, but proteins are almost always studied in dilute aqueous buffer. We
review the experimental evidence that crowding affects the equilibrium thermodynamics of …

MaxSynBio: avenues towards creating cells from the bottom up

P Schwille, J Spatz, K Landfester… - Angewandte Chemie …, 2018 - Wiley Online Library
A large German research consortium mainly within the Max Planck Society (“MaxSynBio”)
was formed to investigate living systems from a fundamental perspective. The research …

Structure-guided evolution of cyan fluorescent proteins towards a quantum yield of 93%

J Goedhart, D Von Stetten, M Noirclerc-Savoye… - Nature …, 2012 - nature.com
Cyan variants of green fluorescent protein are widely used as donors in Förster resonance
energy transfer experiments. The popular, but modestly bright, Enhanced Cyan Fluorescent …

[HTML][HTML] Encoding and decoding cellular information through signaling dynamics

JE Purvis, G Lahav - Cell, 2013 - cell.com
A growing number of studies are revealing that cells can send and receive information by
controlling the temporal behavior (dynamics) of their signaling molecules. In this Review, we …

Scaffold proteins: hubs for controlling the flow of cellular information

MC Good, JG Zalatan, WA Lim - Science, 2011 - science.org
The spatial and temporal organization of molecules within a cell is critical for coordinating
the many distinct activities carried out by the cell. In an increasing number of biological …

Signalling ballet in space and time

BN Kholodenko, JF Hancock, W Kolch - Nature reviews Molecular cell …, 2010 - nature.com
Although we have amassed extensive catalogues of signalling network components, our
understanding of the spatiotemporal control of emergent network structures has lagged …

Differential network biology

T Ideker, NJ Krogan - Molecular systems biology, 2012 - embopress.org
Protein and genetic interaction maps can reveal the overall physical and functional
landscape of a biological system. To date, these interaction maps have typically been …

Probing cellular protein complexes using single-molecule pull-down

A Jain, R Liu, B Ramani, E Arauz, Y Ishitsuka… - Nature, 2011 - nature.com
Proteins perform most cellular functions in macromolecular complexes. The same protein
often participates in different complexes to exhibit diverse functionality. Current ensemble …

Separation and detection of large phosphoproteins using Phos-tag SDS-PAGE

E Kinoshita, E Kinoshita-Kikuta, T Koike - Nature protocols, 2009 - nature.com
We provide a standard phosphate-affinity SDS-PAGE (Mn2+–Phos-tag SDS-PAGE)
protocol, in which Phos-tag is used to analyze large phosphoproteins with molecular …

The endocytic matrix

G Scita, PP Di Fiore - Nature, 2010 - nature.com
Endocytosis has long been thought of as simply a way for cells to internalize nutrients and
membrane-associated molecules. But an explosive growth in knowledge has given a new …