Base flipping

RJ Roberts, X Cheng - Annual review of biochemistry, 1998 - annualreviews.org
Base flipping is the phenomenon whereby a base in normal B-DNA is swung completely out
of the helix into an extrahelical position. It was discovered in 1994 when the first co-crystal …

Diet and the epigenetic (re) programming of phenotypic differences in behavior

PO McGowan, MJ Meaney, M Szyf - Brain research, 2008 - Elsevier
Phenotypic diversity is shaped by both genetic and epigenetic mechanisms that program
tissue specific patterns of gene expression. Cells, including neurons, undergo massive …

Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyl-transferases, and suggests a catalytic mechanism for these enzymes

T Malone, RM Blumenthal, X Cheng - Journal of molecular biology, 1995 - Elsevier
Previous X-ray crystallographic studies have revealed that the catalytic domain of a DNA
methyltransferase (Mtase) generating C5-methylcytosine bears a striking structural similarity …

Targeting DNA methylation in the adult brain through diet

J Allison, A Kaliszewska, S Uceda, M Reiriz, N Arias - Nutrients, 2021 - mdpi.com
Metabolism and nutrition have a significant role in epigenetic modifications such as DNA
methylation, which can influence gene expression. Recently, it has been suggested that …

[PDF][PDF] Universal catalytic domain structure of AdoMet-dependent methyltransferases

G Schluckebier, M O'Gara, W Saenger… - Journal of molecular …, 1995 - academia.edu
11724, USA sites are almost identical and the essential catalytic amino acids coincide. The
comparable protein folding and the existence of equivalent amino acids in similar secondary …

DNA modification by methyltransferases

X Cheng - Current opinion in structural biology, 1995 - Elsevier
Enzymatic methylation of DNA plays important roles in both prokaryotes and eukaryotes.
Structural study of the Hhal DNA methyltransferase has provided considerable insight into …

Nucleotide excision repair eliminates unique DNA-protein cross-links from mammalian cells

DJ Baker, G Wuenschell, L Xia, J Termini… - Journal of Biological …, 2007 - ASBMB
DNA-protein cross-links (DPCs) present a formidable obstacle to cellular processes
because they are" superbulky" compared with the majority of chemical adducts. Elimination …

Enzymatic C5-cytosine methylation of DNA: mechanistic implications of new crystal structures forHhaI methyltransferase-DNA-AdoHcy complexes

M O'Gara, S Klimaŝauskas, RJ Roberts… - Journal of molecular …, 1996 - Elsevier
The refined crystal structures ofHhaI methyltransferase complexed with cognate
unmethylated or methylated DNA together withS-adenosyl-L-homocysteine, along with the …

The mechanism of DNA cytosine-5 methylation: Kinetic and mutational dissection of HhaI methyltransferase

G Vilkaitis, S Serva, E Weinhold… - Journal of Biological …, 2001 - ASBMB
Kinetic and binding studies involving a model DNA cytosine-5-methyltransferase, M. HhaI,
and a 37-mer DNA duplex containing a single hemimethylated target site were applied to …

MHhal binds tightly to substrates containing mismatches at the target base

S Klimašauskas, RJ Roberts - Nucleic acids research, 1995 - academic.oup.com
Abstract ABSTRACT The (cytosine-5) DNA methyltransferase M. Hha l causes its target
cytosine base to be flipped completelyout of the DNA helix upon binding. We have …