Codon usage bias

ST Parvathy, V Udayasuriyan, V Bhadana - Molecular biology reports, 2022 - Springer
Codon usage bias is the preferential or non-random use of synonymous codons, a
ubiquitous phenomenon observed in bacteria, plants and animals. Different species have …

Codon usage and codon pair patterns in non-grass monocot genomes

P Mazumdar, RY Binti Othman, K Mebus… - Annals of …, 2017 - academic.oup.com
Abstract Background and Aims Studies on codon usage in monocots have focused on
grasses, and observed patterns of this taxon were generalized to all monocot species. Here …

[HTML][HTML] Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

JJ Smith, S Kuraku, C Holt, T Sauka-Spengler… - Nature …, 2013 - nature.com
Lampreys are representatives of an ancient vertebrate lineage that diverged from our own∼
500 million years ago. By virtue of this deeply shared ancestry, the sea lamprey (P. marinus) …

陆地棉叶绿体基因组密码子使用偏性的分析

尚明照, 刘方, 华金平, 王坤波 - 中国农业科学, 2011 - chinaagrisci.com
[Objective] The codon usage bias in Gossypium hirsutum chloroplast genome was analyzed
to find the factors affecting the formation of codon bias.[Method] Codon of fifty genes which …

Transgenic plants as a source for the bioscavenging enzyme, human butyrylcholinesterase

BC Geyer, L Kannan, I Cherni… - Plant biotechnology …, 2010 - Wiley Online Library
Organophosphorous pesticides and nerve agents inhibit the enzyme acetylcholinesterase at
neuronal synapses and in neuromuscular junctions. The resulting accumulation of …

[图书][B] Conservative reductionism

M Esfeld, C Sachse - 2011 - taylorfrancis.com
Conservative Reductionism sets out a new theory of the relationship between physics and
the special sciences within the framework of functionalism. It argues that it is wrong-headed …

Codon usage patterns in Chinese bayberry (Myrica rubra) based on RNA-Seq data

C Feng, C Xu, Y Wang, W Liu, X Yin, X Li, M Chen… - BMC genomics, 2013 - Springer
Background Codon usage analysis has been a classical topic for decades and has
significances for studies of evolution, mRNA translation, and new gene discovery, etc. While …

Comparative analysis of transcriptomic data shows the effects of multiple evolutionary selection processes on codon usage in Marsupenaeus japonicus and …

P Wang, Y Mao, Y Su, J Wang - BMC genomics, 2021 - Springer
Background Kuruma shrimp, a major commercial shrimp species in the world, has two
cryptic or sibling species, Marsupenaeus japonicus and Marsupenaeus pulchricaudatus …

Deciphering codon usage patterns and evolutionary forces in chloroplast genes of Camellia sinensis var. assamica and Camellia sinensis var. sinensis in comparison …

S Yengkhom, A Uddin, S Chakraborty - Journal of Integrative Agriculture, 2019 - Elsevier
Codon usage bias (CUB) is a unique property of genome which refers to non-random usage
of synonymous codons in coding sequences. The present study makes an attempt to find out …

A catalogue of putative unique transcripts from Douglas-fir (Pseudotsuga menziesii) based on 454 transcriptome sequencing of genetically diverse, drought stressed …

T Müller, I Ensminger, KJ Schmid - BMC genomics, 2012 - Springer
Abstract Background Douglas-fir (Pseudotsuga menziesii) extends over a wide range of
contrasting environmental conditions, reflecting substantial local adaptation. For this reason …