Devising efficient red‐shifting strategies for bioimaging: A generalizable donor‐acceptor fluorophore prototype

C Chen, C Fang - Chemistry–An Asian Journal, 2020 - Wiley Online Library
Long emission wavelengths, high fluorescence quantum yields (FQYs), and large Stokes
shifts are highly desirable features for fluorescent probes in biological imaging. However …

Frontiers in multiscale modeling of photoreceptor proteins

M Mroginski, S Adam, GS Amoyal… - Photochemistry and …, 2021 - Wiley Online Library
This perspective article highlights the challenges in the theoretical description of
photoreceptor proteins using multiscale modeling, as discussed at the CECAM workshop in …

Retinal chromophore charge delocalization and confinement explain the extreme photophysics of Neorhodopsin

R Palombo, L Barneschi, L Pedraza-González… - Nature …, 2022 - nature.com
The understanding of how the rhodopsin sequence can be modified to exactly modulate the
spectroscopic properties of its retinal chromophore, is a prerequisite for the rational design …

Electrostatic control of photoisomerization pathways in proteins

MG Romei, CY Lin, II Mathews, SG Boxer - Biophysical Journal, 2020 - cell.com
Adam W. Duster1, Hai Lin2. 1Integrative and Systems Biology, University of Colorado
Denver, Denver, CO, USA, 2Chemistry, University of Colorado Denver, Denver, CO, USA …

Directed evolution of a bright variant of mCherry: suppression of nonradiative decay by fluorescence lifetime selections

S Mukherjee, P Manna, ST Hung… - The Journal of …, 2022 - ACS Publications
The approximately linear scaling of fluorescence quantum yield (ϕ) with fluorescence
lifetime (τ) in fluorescent proteins (FPs) has inspired engineering of brighter fluorophores …

Elucidating the role of hydrogen bonding in the optical spectroscopy of the solvated green fluorescent protein chromophore: Using machine learning to establish the …

MS Chen, Y Mao, A Snider, P Gupta… - The Journal of …, 2023 - ACS Publications
Hydrogen bonding interactions with chromophores in chemical and biological environments
play a key role in determining their electronic absorption and relaxation processes, which …

Internal conversion of the anionic GFP chromophore: in and out of the I-twisted S 1/S 0 conical intersection seam

NH List, CM Jones, TJ Martínez - Chemical Science, 2022 - pubs.rsc.org
The functional diversity of the green fluorescent protein (GFP) family is intimately connected
to the interplay between competing photo-induced transformations of the chromophore motif …

Conical intersection accessibility dictates brightness in red fluorescent proteins

E Pieri, AR Walker, M Zhu… - Journal of the American …, 2024 - ACS Publications
Red fluorescent protein (RFP) variants are highly sought after for in vivo imaging since
longer wavelengths improve depth and contrast in fluorescence imaging. However, the …

Structural characterization of fluorescent proteins using tunable femtosecond stimulated Raman spectroscopy

C Chen, JN Henderson, DA Ruchkin, JM Kirsh… - International journal of …, 2023 - mdpi.com
The versatile functions of fluorescent proteins (FPs) as fluorescence biomarkers depend on
their intrinsic chromophores interacting with the protein environment. Besides X-ray …

Chemical control of excited-state reactivity of the anionic green fluorescent protein chromophore

NH List, CM Jones, TJ Martínez - Communications Chemistry, 2024 - nature.com
Controlling excited-state reactivity is a long-standing challenge in photochemistry, as a
desired pathway may be inaccessible or compete with other unwanted channels. An …