[HTML][HTML] A review of graph-based methods for image analysis in digital histopathology

H Sharma, N Zerbe, S Lohmann… - Diagnostic …, 2015 - diagnosticpathology.eu
Digital image analysis of histological datasets is a currently expanding field of research. With
different stains, magnifications and types of tissues, histological images are inherently …

Similarity-based queries for time series data

D Rafiei, A Mendelzon - Proceedings of the 1997 ACM SIGMOD …, 1997 - dl.acm.org
We study a set of linear transformations on the Fourier series representation of a sequence
that can be used as the basis for similarity queries on time-series data. We show that our set …

Cell-graphs: image-driven modeling of structure-function relationship

B Yener - Communications of the ACM, 2016 - dl.acm.org
Cell-graphs: image-driven modeling of structure-function relationship Page 1 74
COMMUNICATIONS OF THE ACM | JANUARY 2017 | VOL. 60 | NO. 1 review articles THE …

Prediction of Tuberculosis From Lung Tissue Images of Diversity Outbred Mice Using Jump Knowledge Based Cell Graph Neural Network

V Acharya, D Choi, B Yener, G Beamer - IEEE Access, 2024 - ieeexplore.ieee.org
Tuberculosis (TB), primarily affecting the lungs, is caused by the bacterium Mycobacterium
tuberculosis and poses a significant health risk. Detecting acid-fast bacilli (AFB) in stained …

Fuzzy technique for microcalcifications clustering in digital mammograms

L Vivona, D Cascio, F Fauci, G Raso - BMC medical imaging, 2014 - Springer
Background Mammography has established itself as the most efficient technique for the
identification of the pathological breast lesions. Among the various types of lesions …

[HTML][HTML] An assessment of imaging informatics for precision medicine in cancer

C Chennubhotla, LP Clarke, A Fedorov… - Yearbook of medical …, 2017 - thieme-connect.com
Objectives: Precision medicine requires the measurement, quantification, and cataloging of
medical characteristics to identify the most effective medical intervention. However, the …

Coupled analysis of in vitro and histology tissue samples to quantify structure-function relationship

E Acar, GE Plopper, B Yener - PloS one, 2012 - journals.plos.org
The structure/function relationship is fundamental to our understanding of biological systems
at all levels, and drives most, if not all, techniques for detecting, diagnosing, and treating …

Epithelial to mesenchymal transition—The roles of cell morphology, labile adhesion and junctional coupling

T Abdulla, L Luna-Zurita, JL De La Pompa… - Computer methods and …, 2013 - Elsevier
Epithelial to mesenchymal transition (EMT) is a fundamental process during development
and disease, including development of the heart valves and tumour metastases. An …

Novel image analysis approach quantifies morphological characteristics of 3D breast culture acini with varying metastatic potentials

L McKeen Polizzotti, B Oztan… - BioMed Research …, 2012 - Wiley Online Library
Prognosis of breast cancer is primarily predicted by the histological grading of the tumor,
where pathologists manually evaluate microscopic characteristics of the tissue. This labor …

A novel dynamic graph-based computational model for predicting salivary gland branching morphogenesis

N Dhulekar, L Bange, A Baskaran… - 2012 IEEE …, 2012 - ieeexplore.ieee.org
In this paper, we introduce a biologically motivated dynamic graph-based growth model to
describe and predict the stages of cleft formation during the process of branching …