Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology
Significant innovations in next-generation sequencing techniques and bioinformatics tools
have impacted our appreciation and understanding of RNA. Practical RNA sequencing …
have impacted our appreciation and understanding of RNA. Practical RNA sequencing …
Contamination issue in viral metagenomics: problems, solutions, and clinical perspectives
H Jurasz, T Pawłowski, K Perlejewski - Frontiers in Microbiology, 2021 - frontiersin.org
We describe the most common internal and external sources and types of contamination
encountered in viral metagenomic studies and discuss their negative impact on sequencing …
encountered in viral metagenomic studies and discuss their negative impact on sequencing …
[HTML][HTML] Next-generation sequencing for constitutional variants in the clinical laboratory, 2021 revision: a technical standard of the American College of Medical …
Next-generation sequencing (NGS) technologies are now established in clinical laboratories
as a primary testing modality in genomic medicine. These technologies have reduced the …
as a primary testing modality in genomic medicine. These technologies have reduced the …
The human “contaminome”: bacterial, viral, and computational contamination in whole genome sequences from 1000 families
The unmapped readspace of whole genome sequencing data tends to be large but is often
ignored. We posit that it contains valuable signals of both human infection and …
ignored. We posit that it contains valuable signals of both human infection and …
Next-generation sequencing applications for the study of fungal pathogens
S Jiang, Y Chen, S Han, L Lv, L Li - Microorganisms, 2022 - mdpi.com
Next-generation sequencing (NGS) has become a widely used technology in biological
research. NGS applications for clinical pathogen detection have become vital technologies …
research. NGS applications for clinical pathogen detection have become vital technologies …
Benchmarking machine learning robustness in COVID-19 genome sequence classification
The rapid spread of the COVID-19 pandemic has resulted in an unprecedented amount of
sequence data of the SARS-CoV-2 genome—millions of sequences and counting. This …
sequence data of the SARS-CoV-2 genome—millions of sequences and counting. This …
Technical and methodological aspects of cell-free nucleic acids analyzes
Analyzes of cell-free nucleic acids (cfNAs) have shown huge potential in many biomedical
applications, gradually entering several fields of research and everyday clinical care. Many …
applications, gradually entering several fields of research and everyday clinical care. Many …
Toward a Predictive Understanding of Cyanobacterial Harmful Algal Blooms through AI Integration of Physical, Chemical, and Biological Data
Freshwater cyanobacterial harmful algal blooms (cyanoHABs) are a worldwide problem
resulting in substantial economic losses, due to harm to drinking water supplies, commercial …
resulting in substantial economic losses, due to harm to drinking water supplies, commercial …
De novo identification of microbial contaminants in low microbial biomass microbiomes with Squeegee
Computational analysis of host-associated microbiomes has opened the door to numerous
discoveries relevant to human health and disease. However, contaminant sequences in …
discoveries relevant to human health and disease. However, contaminant sequences in …
Host-Parasite Interaction of Atlantic salmon (Salmo salar) and the Ectoparasite Neoparamoeba perurans in Amoebic Gill Disease
Marine farmed Atlantic salmon (Salmo salar) are susceptible to recurrent amoebic gill
disease (AGD) caused by the ectoparasite Neoparamoeba perurans over the growout …
disease (AGD) caused by the ectoparasite Neoparamoeba perurans over the growout …