The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems

F Sterpone, S Melchionna, P Tuffery… - Chemical Society …, 2014 - pubs.rsc.org
The OPEP coarse-grained protein model has been applied to a wide range of applications
since its first release 15 years ago. The model, which combines energetic and structural …

Improved PEP-FOLD approach for peptide and miniprotein structure prediction

Y Shen, J Maupetit, P Derreumaux… - Journal of chemical …, 2014 - ACS Publications
Peptides and mini proteins have many biological and biomedical implications, which
motivates the development of accurate methods, suitable for large-scale experiments, to …

PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides

P Thevenet, Y Shen, J Maupetit, F Guyon… - Nucleic acids …, 2012 - academic.oup.com
In the context of the renewed interest of peptides as therapeutics, it is important to have an
on-line resource for 3D structure prediction of peptides with well-defined structures in …

Cancer immunoinformatics: a promising era in the development of peptide vaccines for human papillomavirus-induced cervical cancer

S Kaliamurthi, G Selvaraj, M Junaid… - Current …, 2018 - ingentaconnect.com
Cancer immunoinformatics have led to new directions towards vaccine design from
predicted potential epitope candidates, which are able to stimulate the correct cellular or …

In silico/In vivo analysis of high-risk papillomavirus L1 and L2 conserved sequences for development of cross-subtype prophylactic vaccine

A Namvar, A Bolhassani, G Javadi… - Scientific Reports, 2019 - nature.com
Human papillomavirus (HPV) is the most common sexually transmitted infection in the world
and the main cause of cervical cancer. Nowadays, the virus-like particles (VLPs) based on …

Genome-wide scan for potential CD4+ T-cell vaccine candidates in Candida auris by exploiting reverse vaccinology and evolutionary information

SK Gupta, Ö Osmanoglu, R Minocha, SR Bandi… - Frontiers in …, 2022 - frontiersin.org
Candida auris is a globally emerging fungal pathogen responsible for causing nosocomial
outbreaks in healthcare associated settings. It is known to cause infection in all age groups …

In silico analyses of Wilms׳ tumor protein to designing a novel multi-epitope DNA vaccine against cancer

S Khalili, MR Rahbar, MH Dezfulian… - Journal of theoretical …, 2015 - Elsevier
Predefined and pre-weighted objective criteria and essential role of Wilms׳ tumor wild type
gene (WT1) for maintaining transformed features of cancer cells confirm the high potency of …

Toxoplasma gondii ROP38 protein: Bioinformatics analysis for vaccine design improvement against toxoplasmosis

MRC Nosrati, E Ghasemi, M Shams, S Shamsinia… - Microbial …, 2020 - Elsevier
Rhoptry proteins (ROPs) play a significant role in various stages of Toxoplasma gondii (T.
gondii) life cycle, being critical for both invasion and intracellular survival. ROP38 is a key …

Designing and Modeling of Complex DNA Vaccine Based on Tropomyosin Protein of Boophilus Genus Tick

MM Ranjbar, SK Gupta, K Ghorban, S Nabian… - Applied biochemistry …, 2015 - Springer
Boophilus tick is a bloodsucking ectoparasite that transfers some pathogens, reducing
production and thus leading to economical losses in the cattle industry. Tropomyosin (TPM) …

Prophylactic papillomavirus vaccines

L Ribeiro-Müller, M Müller - Clinics in dermatology, 2014 - Elsevier
Human papillomaviruses (HPV) are the causative agents of cervical cancer, the third most
common cancer in women. The development of prophylactic HPV vaccines Gardasil® and …