How can AI help improve food safety?

C Qian, SI Murphy, RH Orsi… - Annual Review of Food …, 2023 - annualreviews.org
With advances in artificial intelligence (AI) technologies, the development and
implementation of digital food systems are becoming increasingly possible. There is …

Global mapping of cancers: The Cancer Genome Atlas and beyond

C Ganini, I Amelio, R Bertolo, P Bove… - Molecular …, 2021 - Wiley Online Library
Cancer genomes have been explored from the early 2000s through massive exome
sequencing efforts, leading to the publication of The Cancer Genome Atlas in 2013 …

MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice

P Manghi, A Blanco-Míguez, S Manara, A NabiNejad… - Cell Reports, 2023 - cell.com
Mouse models are key tools for investigating host-microbiome interactions. However,
shotgun metagenomics can only profile a limited fraction of the mouse gut microbiome …

The expression of ELOVL4, repressed by MYCN, defines neuroblastoma patients with good outcome

F Rugolo, NG Bazan, J Calandria, B Jun, G Raschellà… - Oncogene, 2021 - nature.com
Cancer cells exhibit dysregulation of critical genes including those involved in lipid
biosynthesis, with subsequent defects in metabolism. Here, we show that ELOngation of …

Utilization of AI–reshaping the future of food safety, agriculture and food security–a critical review

J Rugji, Z Erol, F Taşçı, L Musa… - Critical Reviews in …, 2024 - Taylor & Francis
Artificial intelligence is an emerging technology which harbors a suite of mechanisms that
have the potential to be leveraged for reaping value across multiple domains. Lately, there is …

Literature on applied machine learning in metagenomic classification: a scoping review

P Tonkovic, S Kalajdziski, E Zdravevski, P Lameski… - Biology, 2020 - mdpi.com
Simple Summary Technological advancements have led to modern DNA sequencing
methods, capable of generating large amounts of data describing the microorganisms that …

[HTML][HTML] Epigenetic “drivers” of cancer

A Butera, G Melino, I Amelio - Journal of molecular biology, 2021 - Elsevier
Genetics is at the basis of cancer initiation and evolution, but emerging evidence indicate
that mutations are not sufficient to produce cancer, indicating a role for epigenetic …

Global genetic cartography of urban metagenomes and anti-microbial resistance

D Danko, D Bezdan, E Afshinnekoo, S Ahsanuddin… - BioRxiv, 2019 - biorxiv.org
Although studies have shown that urban environments and mass-transit systems have
distinct genetic profiles, there are no systematic worldwide studies of these dense, human …

Gene-based microbiome representation enhances host phenotype classification

T Deschênes, FWE Tohoundjona, PL Plante… - Msystems, 2023 - Am Soc Microbiol
With the concomitant advances in both the microbiome and machine learning fields, the gut
microbiome has become of great interest for the potential discovery of biomarkers to be used …

Human disease prediction from microbiome data by multiple feature fusion and deep learning

X Chen, Z Zhu, W Zhang, Y Wang, F Wang, J Yang… - Iscience, 2022 - cell.com
Human disease prediction from microbiome data has broad implications in metagenomics. It
is rare for the existing methods to consider abundance profiles from both known and …