[PDF][PDF] Implications of AlphaFold2 for crystallographic phasing by molecular replacement

AJ McCoy, MD Sammito, RJ Read - Acta Crystallographica Section …, 2022 - journals.iucr.org
The AlphaFold2 results in the 14th edition of Critical Assessment of Structure Prediction
(CASP14) showed that accurate (low root-mean-square deviation) in silico models of protein …

The X-ray crystallography phase problem solved thanks to AlphaFold and RoseTTAFold models: a case-study report

I Barbarin-Bocahu, M Graille - Acta Crystallographica Section D …, 2022 - journals.iucr.org
The breakthrough recently made in protein structure prediction by deep-learning programs
such as AlphaFold and RoseTTAFold will certainly revolutionize biology over the coming …

The impact of AlphaFold2 on experimental structure solution

M Edich, DC Briggs, O Kippes, Y Gao, A Thorn - Faraday Discussions, 2022 - pubs.rsc.org
AlphaFold2 is a machine-learning based program that predicts a protein structure based on
the amino acid sequence. In this article, we report on the current usages of this new tool and …

[PDF][PDF] MrParse: finding homologues in the PDB and the EBI AlphaFold database for molecular replacement and more

AJ Simpkin, JMH Thomas, RM Keegan… - … Section D: Structural …, 2022 - journals.iucr.org
Crystallographers have an array of search-model options for structure solution by molecular
replacement (MR). The well established options of homologous experimental structures and …

[PDF][PDF] Solving protein structures by combining structure prediction, molecular replacement and direct-methods-aided model completion

Z Li, H Fan, W Ding - IUCrJ, 2024 - journals.iucr.org
Highly accurate protein structure prediction can generate accurate models of protein and
protein–protein complexes in X-ray crystallography. However, the question of how to make …

Structural and enzymatic characterization of the sialidase SiaPG from Porphyromonas gingivalis

WB Dong, YL Jiang, ZL Zhu, J Zhu, Y Li… - … Section F: Structural …, 2023 - journals.iucr.org
The sialidases, which catalyze the hydrolysis of sialic acid from extracellular
glycoconjugates, are a group of major virulence factors in various pathogenic bacteria. In …

Slice'N'Dice: Maximising the value of predicted models for structural biologists

AJ Simpkin, LG Elliott, K Stevenson, E Krissinel… - bioRxiv, 2022 - biorxiv.org
With the advent of next generation modelling methods, such as AlphaFold2, structural
biologists are increasingly using predicted structures as search models for Molecular …

[PDF][PDF] Structural and enzymatic characterization of the

WB Dong, YL Jiang, ZL Zhu, J Zhu, Y Li, R Xiaa… - researchgate.net
The sialidases, which catalyze the hydrolysis of sialic acid from extracellular
glycoconjugates, are a group of major virulence factors in various pathogenic bacteria. In …