The occurrence and function of alternative splicing in fungi

S Fang, X Hou, K Qiu, R He, X Feng, X Liang - Fungal Biology Reviews, 2020 - Elsevier
Alternative splicing is a common but complex posttranscriptional regulatory process in
eukaryotes, through which multiple different transcripts are produced from a single pre …

Genome sequence of Plasmopara viticola and insight into the pathogenic mechanism

L Yin, Y An, J Qu, X Li, Y Zhang, I Dry, H Wu, J Lu - Scientific Reports, 2017 - nature.com
Plasmopara viticola causes downy mildew disease of grapevine which is one of the most
devastating diseases of viticulture worldwide. Here we report a 101.3 Mb whole genome …

Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection

J Jeon, KT Kim, J Choi, K Cheong, J Ko, G Choi… - RNA biology, 2022 - Taylor & Francis
Alternative splicing (AS) contributes to diversifying and regulating cellular responses to
environmental conditions and developmental cues by differentially producing multiple …

Comparative genomics of downy mildews reveals potential adaptations to biotrophy

K Fletcher, SJ Klosterman, L Derevnina, F Martin… - BMC genomics, 2018 - Springer
Background Spinach downy mildew caused by the oomycete Peronospora effusa is a
significant burden on the expanding spinach production industry, especially for organic …

New insights into genome annotation in Podospora anserina through re-exploiting multiple RNA-seq data

G Lelandais, D Remy, F Malagnac, P Grognet - BMC genomics, 2022 - Springer
Background Publicly available RNA-seq datasets are often underused although being
helpful to improve functional annotation of eukaryotic genomes. This is especially true for …

Genome‐wide alternative splicing profiling in the fungal plant pathogen Sclerotinia sclerotiorum during the colonization of diverse host families

HMM Ibrahim, S Kusch, M Didelon… - Molecular plant …, 2021 - Wiley Online Library
Sclerotinia sclerotiorum is a notorious generalist plant pathogen that threatens more than
600 host plants, including wild and cultivated species. The molecular bases underlying the …

Transcriptome and small RNAome dynamics during a resistant and susceptible interaction between cucumber and downy mildew

A Burkhardt, B Day - The Plant Genome, 2016 - Wiley Online Library
Cucumber (Cucumis sativus L.) downy mildew, caused by the obligate oomycete pathogen
Pseudoperonospora cubensis (Berk. and Curt.) Rostov., is the primary factor limiting …

The Nuclear-Localized RxLR Effector PvAvh74 From Plasmopara viticola Induces Cell Death and Immunity Responses in Nicotiana benthamiana

X Yin, B Shang, M Dou, R Liu, T Chen… - Frontiers in …, 2019 - frontiersin.org
Downy mildew is one of the most serious diseases of grapevine (Vitis spp). The causal
agent of grapevine downy mildew, Plasmopara viticola, is an obligate biotrophic oomycete …

Identification of Genetic Variation between Obligate Plant Pathogens Pseudoperonospora cubensis and P. humuli Using RNA Sequencing and Genotyping-By …

CF Summers, CM Gulliford, CH Carlson, JA Lillis… - PLoS …, 2015 - journals.plos.org
RNA sequencing (RNA-seq) and genotyping-by-sequencing (GBS) were used for single
nucleotide polymorphism (SNP) identification from two economically important obligate plant …

OMICS in plant disease resistance

V Bhadauria - Current Issues in Molecular Biology, 2016 - mdpi.com
The term OMICS, which look into the global profiling and analysis of various cellular
molecules, has gained new heights with the advancement of next-generation sequencing …