NbClust: an R package for determining the relevant number of clusters in a data set

M Charrad, N Ghazzali, V Boiteau… - Journal of statistical …, 2014 - jstatsoft.org
Clustering is the partitioning of a set of objects into groups (clusters) so that objects within a
group are more similar to each others than objects in different groups. Most of the clustering …

Gut microbiome composition differences among breeds impact feed efficiency in swine

M Bergamaschi, F Tiezzi, J Howard, YJ Huang… - Microbiome, 2020 - Springer
Background Feed efficiency is a crucial parameter in swine production, given both its
economic and environmental impact. The gut microbiota plays an essential role in nutrient …

A systematic study on the application of scatter-corrective and spectral-derivative preprocessing for multivariate prediction of soil organic carbon by Vis-NIR spectra

AC Dotto, RSD Dalmolin, A ten Caten, S Grunwald - Geoderma, 2018 - Elsevier
Soil organic carbon (SOC) plays a crucial role as an ecosystems indicator. Its quantification
requires an affordable, and less time-consuming method. Visible and near infrared (Vis-NIR) …

clValid: An R package for cluster validation

G Brock, V Pihur, S Datta, S Datta - Journal of statistical Software, 2008 - jstatsoft.org
The R package clValid contains functions for validating the results of a clustering analysis.
There are three main types of cluster validation measures available," internal"," stability" …

Trade-offs of European agricultural abandonment

EH van der Zanden, PH Verburg, CJE Schulp… - Land use policy, 2017 - Elsevier
Agricultural land abandonment is a policy challenge, especially for areas with unfavorable
conditions for agriculture and remote and mountainous areas. Agricultural abandonment is …

[HTML][HTML] Maternal diet shapes the breast milk microbiota composition and diversity: impact of mode of delivery and antibiotic exposure

E Cortes-Macías, M Selma-Royo… - The Journal of …, 2021 - Elsevier
Background Breast milk is a complex biofluid that provides nutrients and bioactive agents,
including bacteria, for the development of the infant gut microbiota. However, the impact of …

Archetypical patterns and trajectories of land systems in Europe

C Levers, D Müller, K Erb, H Haberl, MR Jepsen… - Regional Environmental …, 2018 - Springer
Assessments of land-system change have dominantly focused on conversions among broad
land-use categories, whereas intensity changes within these categories have received less …

Distinct maternal microbiota clusters are associated with diet during pregnancy: impact on neonatal microbiota and infant growth during the first 18 months of life

I García-Mantrana, M Selma-Royo, S González… - Gut …, 2020 - Taylor & Francis
Nutrition during pregnancy plays an important role in maternal–neonatal health. However,
the impact of specific dietary components during pregnancy on maternal gut microbiota and …

M3C: Monte Carlo reference-based consensus clustering

CR John, D Watson, D Russ, K Goldmann… - Scientific reports, 2020 - nature.com
Genome-wide data is used to stratify patients into classes for precision medicine using
clustering algorithms. A common problem in this area is selection of the number of clusters …

Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth

D Lu, F Tiezzi, C Schillebeeckx, NP McNulty, C Schwab… - Microbiome, 2018 - Springer
Background In pigs, gut bacteria have been shown to play important roles in nutritional,
physiological, and immunological processes in the host. However, the contribution of their …