Big-data science in porous materials: materials genomics and machine learning

KM Jablonka, D Ongari, SM Moosavi, B Smit - Chemical reviews, 2020 - ACS Publications
By combining metal nodes with organic linkers we can potentially synthesize millions of
possible metal–organic frameworks (MOFs). The fact that we have so many materials opens …

giotto-tda:: A topological data analysis toolkit for machine learning and data exploration

G Tauzin, U Lupo, L Tunstall, JB Pérez, M Caorsi… - Journal of Machine …, 2021 - jmlr.org
We introduce giotto-tda, a Python library that integrates high-performance topological data
analysis with machine learning via a scikit-learn-compatible API and state-of-the-art C++ …

A comparative study of machine learning methods for persistence diagrams

D Barnes, L Polanco, JA Perea - Frontiers in Artificial Intelligence, 2021 - frontiersin.org
Many and varied methods currently exist for featurization, which is the process of mapping
persistence diagrams to Euclidean space, with the goal of maximally preserving structure …

Persistent homology of complex networks for dynamic state detection

A Myers, E Munch, FA Khasawneh - Physical Review E, 2019 - APS
In this paper we develop an alternative topological data analysis (TDA) approach for
studying graph representations of time series of dynamical systems. Specifically, we show …

Deep reconstruction of strange attractors from time series

W Gilpin - Advances in neural information processing …, 2020 - proceedings.neurips.cc
Experimental measurements of physical systems often have a limited number of
independent channels, causing essential dynamical variables to remain unobserved …

[HTML][HTML] Tinytla: Topological landscape analysis for optimization problem classification in a limited sample setting

G Petelin, G Cenikj, T Eftimov - Swarm and Evolutionary Computation, 2024 - Elsevier
In numerical optimization, the characterization of optimization problems and their properties
has been a long-standing issue. Overcoming it is a crucial prerequisite for many optimization …

SFCM: A fuzzy clustering algorithm of extracting the shape information of data

QT Bui, B Vo, V Snasel, W Pedrycz… - … on Fuzzy Systems, 2020 - ieeexplore.ieee.org
Topological data analysis is a new theoretical trend using topological techniques to mine
data. This approach helps determine topological data structures. It focuses on investigating …

Topological analysis of differential effects of ketamine and propofol anaesthesia on brain dynamics

TF Varley, V Denny, O Sporns… - Royal Society open …, 2021 - royalsocietypublishing.org
Research has found that the vividness of conscious experience is related to brain dynamics.
Despite both being anaesthetics, propofol and ketamine produce different subjective states …

Discrete morse sandwich: Fast computation of persistence diagrams for scalar data–an algorithm and a benchmark

P Guillou, J Vidal, J Tierny - IEEE Transactions on Visualization …, 2023 - ieeexplore.ieee.org
This paper introduces an efficient algorithm for persistence diagram computation, given an
input piecewise linear scalar field defined on a-dimensional simplicial complex, with. Our …

Decorated merge trees for persistent topology

J Curry, H Hang, W Mio, T Needham… - Journal of Applied and …, 2022 - Springer
This paper introduces decorated merge trees (DMTs) as a novel invariant for persistent
spaces. DMTs combine both π 0 and H n information into a single data structure that …