Cell factory design with advanced metabolic modelling empowered by artificial intelligence

H Lu, L Xiao, W Liao, X Yan, J Nielsen - Metabolic Engineering, 2024 - Elsevier
Advances in synthetic biology and artificial intelligence (AI) have provided new opportunities
for modern biotechnology. High-performance cell factories, the backbone of industrial …

[HTML][HTML] Beyond membrane components: uncovering the intriguing world of fungal sphingolipid synthesis and regulation

SA Usmani, M Kumar, K Arya, B Ali, N Bhardwaj… - Research in …, 2023 - Elsevier
Sphingolipids (SLs) are essential to fungal survival and represent a major class of structural
and signaling lipids. Unique SL structures and their biosynthetic enzymes in filamentous …

Enabling pathway design by multiplex experimentation and machine learning

AG Boob, J Chen, H Zhao - Metabolic Engineering, 2024 - Elsevier
The remarkable metabolic diversity observed in nature has provided a foundation for
sustainable production of a wide array of valuable molecules. However, transferring the …

KETCHUP: Parameterizing of large-scale kinetic models using multiple datasets with different reference states

M Hu, PF Suthers, CD Maranas - Metabolic engineering, 2024 - Elsevier
Large-scale kinetic models provide the computational means to dynamically link metabolic
reaction fluxes to metabolite concentrations and enzyme levels while also conforming to …

Iterative design of training data to control intricate enzymatic reaction networks

B van Sluijs, T Zhou, B Helwig, MG Baltussen… - Nature …, 2024 - nature.com
Kinetic modeling of in vitro enzymatic reaction networks is vital to understand and control the
complex behaviors emerging from the nonlinear interactions inside. However, modeling is …

Effects of isolated Saccharomyces cerevisiae on the metabolites and volatile organic compounds of Chinese-style sausage

X Nie, X Jia, X Kang, H Pu, Z Ling, X Wang, X Yu… - Food Research …, 2024 - Elsevier
Chinese sausage is a highly valued traditional meat product in China, renowned for its
distinctive flavor and characteristic red color (Xiao, Liu, Chen, Xie, & Li, 2020). Typically …

The fatty acid 2-hydroxylase CsSCS7 is a key hyphal growth factor and potential control target in Colletotrichum siamense

Y Xi, X Long, M Song, Y Liu, J Yan, Y Lv, H Yang… - Mbio, 2024 - Am Soc Microbiol
ABSTRACT SCS7 is a fatty acid 2-hydroxylase required for the synthesis of inositol
phosphorylceramide but is not essential for normal growth in Saccharomyces cerevisiae …

Model-guided metabolic engineering of curcuminoid production in pseudomonas putida

M Martin-Pascual, S Moreno-Paz, RP Van Rosmalen… - bioRxiv, 2024 - biorxiv.org
Production of value-added, plant-derived compounds in microbes increasingly attracts
commercially interest in food and pharmaceutical industries. However, plant metabolic …

[PDF][PDF] Iterative design of training data to control intricate enzymatic reaction networks

B Sluijs, T Zhou, B Helwig, MG Baltussen… - 2024 - repository.ubn.ru.nl
Results Overview of the nucleotide salvage pathway The in vitro ERN constructed in this
work derives from the nucleotide salvage pathway (Fig. 1 a), which regenerates nucleotides …

[PDF][PDF] Exploration of machine learning approaches with genome-scale metabolic model-generated fluxes

G Magazzu - 2023 - research.tees.ac.uk
Biology, from the ancient Greek,“study of life”, is the most fascinating yet complex of all
sciences. Its understanding is paramount in solving many current problems we face in our …