[HTML][HTML] Bridging the layers: towards integration of signal transduction, regulation and metabolism into mathematical models

E Gonçalves, J Bucher, A Ryll, J Niklas, K Mauch… - Molecular …, 2013 - pubs.rsc.org
Mathematical modelling is increasingly becoming an indispensable tool for the study of
cellular processes, allowing their analysis in a systematic and comprehensive manner. In …

Understanding the mTOR signaling pathway via mathematical modeling

N Sulaimanov, M Klose, H Busch… - … : Systems Biology and …, 2017 - Wiley Online Library
The mechanistic target of rapamycin (mTOR) is a central regulatory pathway that integrates
a variety of environmental cues to control cellular growth and homeostasis by intricate …

[HTML][HTML] Multiplicity of steady states in glycolysis and shift of metabolic state in cultured mammalian cells

BC Mulukutla, A Yongky, S Grimm, P Daoutidis… - PLoS one, 2015 - journals.plos.org
Cultured mammalian cells exhibit elevated glycolysis flux and high lactate production. In the
industrial bioprocesses for biotherapeutic protein production, glucose is supplemented to …

[HTML][HTML] Formate induces a metabolic switch in nucleotide and energy metabolism

K Oizel, J Tait-Mulder… - Cell death & …, 2020 - nature.com
Formate is a precursor for the de novo synthesis of purine and deoxythymidine nucleotides.
Formate also interacts with energy metabolism by promoting the synthesis of adenine …

[HTML][HTML] Computational model predicts the effects of targeting cellular metabolism in pancreatic cancer

M Roy, SD Finley - Frontiers in physiology, 2017 - frontiersin.org
Reprogramming of energy metabolism is a hallmark of cancer that enables the cancer cells
to meet the increased energetic requirements due to uncontrolled proliferation. One …

BPA exposure enhances the metastatic aggression of ovarian cancer through the ERα/AKT/mTOR/HIF-1α signaling axis

X Xie, Y Zhu, H Cheng, H Li, Y Zhang, R Wang… - Food and Chemical …, 2023 - Elsevier
Long-term exposure to bisphenol A (BPA) in humans may promote ovarian cancer
development. In present study, the mechanisms by which BPA mediates the aggression …

Hierarchical bond graph modelling of biochemical networks

PJ Gawthrop, J Cursons… - Proceedings of the …, 2015 - royalsocietypublishing.org
The bond graph approach to modelling biochemical networks is extended to allow
hierarchical construction of complex models from simpler components. This is made …

[HTML][HTML] Connecting signaling and metabolic pathways in EGF receptor-mediated oncogenesis of glioblastoma

AK Bag, S Mandloi, S Jarmalavicius… - PLoS Computational …, 2019 - journals.plos.org
As malignant transformation requires synchronization of growth-driving signaling (S) and
metabolic (M) pathways, defining cancer-specific SM interconnected networks (SMINs) …

An overview of bioinformatics methods for modeling biological pathways in yeast

J Hou, L Acharya, D Zhu, J Cheng - Briefings in functional …, 2016 - academic.oup.com
The advent of high-throughput genomics techniques, along with the completion of genome
sequencing projects, identification of protein–protein interactions and reconstruction of …

Dynamic modeling of signal transduction by mTOR complexes in cancer

M Dorvash, M Farahmandnia, P Mosaddeghi… - Journal of Theoretical …, 2019 - Elsevier
Signal integration has a crucial role in the cell fate decision and dysregulation of the cellular
signaling pathways is a primary characteristic of cancer. As a signal integrator, mTOR shows …