[HTML][HTML] Surface chemistry applications and development of immunosensors using electrochemical impedance spectroscopy: A comprehensive review

C Robinson, VB Juska, A O'Riordan - Environmental Research, 2023 - Elsevier
Immunosensors are promising alternatives as detection platforms for the current gold
standards methods. Electrochemical immunosensors have already proven their capability …

Fast analysis of molecular dynamics trajectories with graphics processing units—Radial distribution function histogramming

BG Levine, JE Stone, A Kohlmeyer - Journal of computational physics, 2011 - Elsevier
The calculation of radial distribution functions (RDFs) from molecular dynamics trajectory
data is a common and computationally expensive analysis task. The rate limiting step in the …

GolP: An atomistic force‐field to describe the interaction of proteins with Au (111) surfaces in water

F Iori, R Di Felice, E Molinari… - Journal of computational …, 2009 - Wiley Online Library
A classical atomistic force field to describe the interaction of proteins with gold (111)
surfaces in explicit water has been devised. The force field is specifically designed to be …

Molecular dynamics simulation study of self-assembled monolayers of alkanethiol surfactants on spherical gold nanoparticles

PK Ghorai, SC Glotzer - The Journal of Physical Chemistry C, 2007 - ACS Publications
Atomistic molecular dynamics (MD) simulations of self-assembled alkanethiol monolayers
are performed to investigate the ligand shell organization of homoligand surfactants on …

Patterning of self-assembled monolayers of amphiphilic multisegment ligands on nanoparticles and design parameters for protein interactions

SE Hoff, D Di Silvio, RF Ziolo, SE Moya, H Heinz - ACS nano, 2022 - ACS Publications
Functionalization of nanoparticles with specific ligands is helpful to control specific
diagnostic and therapeutic responses such as protein adsorption, cell targeting, and …

Probing the Photothermal Effect of Gold‐Based Nanocages with Surface‐Enhanced Raman Scattering (SERS)

M Rycenga, Z Wang, E Gordon… - Angewandte Chemie …, 2009 - Wiley Online Library
Surface-enhanced Raman scattering (SERS) is a fascinating process by which normally
weak Raman signals can be amplified by 8–10 orders in magnitude.[1] These large …

Ligand-mediated interactions between nanoscale surfaces depend sensitively and nonlinearly on temperature, facet dimensions, and ligand coverage

A Widmer-Cooper, PL Geissler - ACS nano, 2016 - ACS Publications
Nanoparticles are often covered in ligand monolayers, which can undergo a temperature-
dependent order–disorder transition that switches the particle–particle interaction from …

Atomistic simulations of biofouling and molecular transfer of a cross-linked aromatic polyamide membrane for desalination

MS Jahan Sajib, Y Wei, A Mishra, L Zhang, KI Nomura… - Langmuir, 2020 - ACS Publications
Reverse osmosis through a polyamide (PA) membrane is an important technique for water
desalination and purification. In this study, molecular dynamics simulations were performed …

Unraveling hydrophobic interactions at the molecular scale using force spectroscopy and molecular dynamics simulations

P Stock, JI Monroe, T Utzig, DJ Smith, MS Shell… - ACS …, 2017 - ACS Publications
Interactions between hydrophobic moieties steer ubiquitous processes in aqueous media,
including the self-organization of biologic matter. Recent decades have seen tremendous …

Modeling the self-assembly of benzenedicarboxylic acids using monte carlo and molecular dynamics simulations

N Martsinovich, A Troisi - The Journal of Physical Chemistry C, 2010 - ACS Publications
We present a theoretical modeling study of self-assembly of molecules into two-dimensional
(2D) hydrogen-bonded networks. We compare two computational techniques, molecular …