The calculation of radial distribution functions (RDFs) from molecular dynamics trajectory data is a common and computationally expensive analysis task. The rate limiting step in the …
F Iori, R Di Felice, E Molinari… - Journal of computational …, 2009 - Wiley Online Library
A classical atomistic force field to describe the interaction of proteins with gold (111) surfaces in explicit water has been devised. The force field is specifically designed to be …
PK Ghorai, SC Glotzer - The Journal of Physical Chemistry C, 2007 - ACS Publications
Atomistic molecular dynamics (MD) simulations of self-assembled alkanethiol monolayers are performed to investigate the ligand shell organization of homoligand surfactants on …
Functionalization of nanoparticles with specific ligands is helpful to control specific diagnostic and therapeutic responses such as protein adsorption, cell targeting, and …
M Rycenga, Z Wang, E Gordon… - Angewandte Chemie …, 2009 - Wiley Online Library
Surface-enhanced Raman scattering (SERS) is a fascinating process by which normally weak Raman signals can be amplified by 8–10 orders in magnitude.[1] These large …
Nanoparticles are often covered in ligand monolayers, which can undergo a temperature- dependent order–disorder transition that switches the particle–particle interaction from …
MS Jahan Sajib, Y Wei, A Mishra, L Zhang, KI Nomura… - Langmuir, 2020 - ACS Publications
Reverse osmosis through a polyamide (PA) membrane is an important technique for water desalination and purification. In this study, molecular dynamics simulations were performed …
Interactions between hydrophobic moieties steer ubiquitous processes in aqueous media, including the self-organization of biologic matter. Recent decades have seen tremendous …
We present a theoretical modeling study of self-assembly of molecules into two-dimensional (2D) hydrogen-bonded networks. We compare two computational techniques, molecular …