Molecular phylogenetics: principles and practice
Phylogenies are important for addressing various biological questions such as relationships
among species or genes, the origin and spread of viral infection and the demographic …
among species or genes, the origin and spread of viral infection and the demographic …
A survey of methods and tools to detect recent and strong positive selection
P Pavlidis, N Alachiotis - Journal of Biological Research-Thessaloniki, 2017 - Springer
Positive selection occurs when an allele is favored by natural selection. The frequency of the
favored allele increases in the population and due to genetic hitchhiking the neighboring …
favored allele increases in the population and due to genetic hitchhiking the neighboring …
Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
Bayesian Phylogenetic Analysis on Multi-Core Compute Architectures: Implementation and Evaluation of BEAGLE in RevBayes With MPI
K Smith, D Ayres, R Neumaier, G Wörheide… - Systematic …, 2024 - academic.oup.com
Phylogenies are central to many research areas in biology and commonly estimated using
likelihood-based methods. Unfortunately, any likelihood-based method, including Bayesian …
likelihood-based methods. Unfortunately, any likelihood-based method, including Bayesian …
FPGA acceleration of probabilistic sentential decision diagrams with high-level synthesis
Probabilistic Sentential Decision Diagrams (PSDDs) provide efficient methods for modeling
and reasoning with probability distributions in the presence of massive logical constraints …
and reasoning with probability distributions in the presence of massive logical constraints …
Regular feature extraction for recognition of Braille
CM Ng, V Ng, Y Lau - Proceedings Third International …, 1999 - ieeexplore.ieee.org
Braille, a touch-reading system for visually impaired people was first introduced in 1825 by
Louis Braille. Editing and reprinting Braille text that was originally embossed on paper is …
Louis Braille. Editing and reprinting Braille text that was originally embossed on paper is …
Felsenstein phylogenetic likelihood
D Posada, KA Crandall - Journal of molecular evolution, 2021 - Springer
Abstract In 1981, the Journal of Molecular Evolution (JME) published an article entitled
“Evolutionary trees from DNA sequences: A maximum likelihood approach” by Joseph (Joe) …
“Evolutionary trees from DNA sequences: A maximum likelihood approach” by Joseph (Joe) …
Statistical robustness of Markov chain Monte Carlo accelerators
Statistical machine learning often uses probabilistic models and algorithms, such as Markov
Chain Monte Carlo (MCMC), to solve a wide range of problems. Probabilistic computations …
Chain Monte Carlo (MCMC), to solve a wide range of problems. Probabilistic computations …
Scalable linkage-disequilibrium-based selective sweep detection: a performance guide
N Alachiotis, P Pavlidis - GigaScience, 2016 - academic.oup.com
Background Linkage disequilibrium is defined as the non-random associations of alleles at
different loci, and it occurs when genotypes at the two loci depend on each other. The model …
different loci, and it occurs when genotypes at the two loci depend on each other. The model …
[PDF][PDF] Models, optimizations, and tools for large-scale phylogenetic inference, handling sequence uncertainty, and taxonomic validation
O Kozlov - 2018 - cme.h-its.org
Zusammenfassung Das Konzept der Evolution ist in der modernen Biologie von zentraler
Bedeutung. Deswegen liefert die Phylogenetik, die Lehre über die Verwandschaften und …
Bedeutung. Deswegen liefert die Phylogenetik, die Lehre über die Verwandschaften und …