Replication stress and cancer

H Gaillard, T García-Muse, A Aguilera - Nature Reviews Cancer, 2015 - nature.com
Genome instability is a hallmark of cancer, and DNA replication is the most vulnerable
cellular process that can lead to it. Any condition leading to high levels of DNA damage will …

Serine, glycine and one-carbon units: cancer metabolism in full circle

JW Locasale - Nature Reviews Cancer, 2013 - nature.com
One-carbon metabolism involving the folate and methionine cycles integrates nutritional
status from amino acids, glucose and vitamins, and generates diverse outputs, such as the …

[HTML][HTML] Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs

K Hadi, X Yao, JM Behr, A Deshpande… - Cell, 2020 - cell.com
Cancer genomes often harbor hundreds of somatic DNA rearrangement junctions, many of
which cannot be easily classified into simple (eg, deletion) or complex (eg, chromothripsis) …

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

SF Altschul, TL Madden, AA Schäffer… - Nucleic acids …, 1997 - academic.oup.com
The BLAST programs are widely used tools for searching protein and DNA databases for
sequence similarities. For protein comparisons, a variety of definitional, algorithmic and …

Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers

GA Calin, C Sevignani, CD Dumitru… - Proceedings of the …, 2004 - National Acad Sciences
A large number of tiny noncoding RNAs have been cloned and named microRNAs (miRs).
Recently, we have reported that miR-15a and miR-16a, located at 13q14, are frequently …

A census of human cancer genes

PA Futreal, L Coin, M Marshall, T Down… - Nature reviews …, 2004 - nature.com
A central aim of cancer research has been to identify the mutated genes that are causally
implicated in oncogenesis ('cancer genes'). After two decades of searching, how many have …

Fragile sites in cancer: more than meets the eye

TW Glover, TE Wilson, MF Arlt - Nature Reviews Cancer, 2017 - nature.com
Ever since initial suggestions that instability at common fragile sites (CFSs) could be
responsible for chromosome rearrangements in cancers, CFSs and associated genes have …

Heritable components of the human fecal microbiome are associated with visceral fat

M Beaumont, JK Goodrich, MA Jackson, I Yet… - Genome biology, 2016 - Springer
Background Variation in the human fecal microbiota has previously been associated with
body mass index (BMI). Although obesity is a global health burden, the accumulation of …

p53 activation by knockdown technologies

ME Robu, JD Larson, A Nasevicius, S Beiraghi… - PLoS …, 2007 - journals.plos.org
Morpholino phosphorodiamidate antisense oligonucleotides (MOs) and short interfering
RNAs (siRNAs) are commonly used platforms to study gene function by sequence-specific …

Chromosome fragile sites

SG Durkin, TW Glover - Annu. Rev. Genet., 2007 - annualreviews.org
Chromosomal fragile sites are specific loci that preferentially exhibit gaps and breaks on
metaphase chromosomes following partial inhibition of DNA synthesis. Their discovery has …