Molecular mechanisms of adaptive evolution in wild animals and plants

Y Hu, X Wang, Y Xu, H Yang, Z Tong, R Tian… - Science China Life …, 2023 - Springer
Wild animals and plants have developed a variety of adaptive traits driven by adaptive
evolution, an important strategy for species survival and persistence. Uncovering the …

Open questions in the study of de novo genes: what, how and why

A McLysaght, LD Hurst - Nature Reviews Genetics, 2016 - nature.com
The study of de novo protein-coding genes is maturing from the ad hoc reporting of
individual cases to the systematic analysis of extensive genomic data from several species …

De novo gene birth

SB Van Oss, AR Carvunis - PLoS genetics, 2019 - journals.plos.org
De novo gene birth is the process by which new genes evolve from DNA sequences that
were ancestrally non-genic. De novo genes represent a subset of novel genes, and may be …

CRISPR/Cas9‐based editing of NF‐YC4 promoters yields high‐protein rice and soybean

L Wang, S O'Conner, R Tanvir, W Zheng… - New …, 2024 - Wiley Online Library
Genome editing is a revolution in biotechnology for crop improvement with the final product
lacking transgenes. However, most derived traits have been generated through edits that …

The Arabidopsis Transcription Factor NAC016 Promotes Drought Stress Responses by Repressing AREB1 Transcription through a Trifurcate Feed-Forward …

Y Sakuraba, YS Kim, SH Han, BD Lee… - The Plant Cell, 2015 - academic.oup.com
Drought and other abiotic stresses negatively affect plant growth and development and thus
reduce productivity. The plant-specific NAM/ATAF1/2/CUC2 (NAC) transcription factors have …

Arabidopsis and primary photosynthetic metabolism–more than the icing on the cake

M Stitt, J Lunn, B Usadel - The Plant Journal, 2010 - Wiley Online Library
Historically speaking, Arabidopsis was not the plant of choice for investigating
photosynthesis, with physiologists and biochemists favouring other species such as …

Putting DNA methylation in context: from genomes to gene expression in plants

CE Niederhuth, RJ Schmitz - Biochimica et Biophysica Acta (BBA)-Gene …, 2017 - Elsevier
Plant DNA methylation is its own language, interpreted by the cell to maintain silencing of
transposons, facilitate chromatin structure, and to ensure proper expression of some genes …

New genes from non-coding sequence: the role of de novo protein-coding genes in eukaryotic evolutionary innovation

A McLysaght, D Guerzoni - Philosophical Transactions of …, 2015 - royalsocietypublishing.org
The origin of novel protein-coding genes de novo was once considered so improbable as to
be impossible. In less than a decade, and especially in the last five years, this view has been …

Coming of age: orphan genes in plants

ZW Arendsee, L Li, ES Wurtele - Trends in plant science, 2014 - cell.com
Sizable minorities of protein-coding genes from every sequenced eukaryotic and prokaryotic
genome are unique to the species. These so-called 'orphan genes' may evolve de novo from …

[PDF][PDF] Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plants

T Shi, RS Rahmani, PF Gugger, M Wang… - Molecular Biology …, 2020 - academic.oup.com
For most sequenced flowering plants, multiple whole-genome duplications (WGDs) are
found. Duplicated genes following WGD often have different fates that can quickly disappear …