Small RNA-omics for plant virus identification, virome reconstruction, and antiviral defense characterization

MM Pooggin - Frontiers in microbiology, 2018 - frontiersin.org
RNA interference (RNAi)-based antiviral defense generates small interfering RNAs that
represent the entire genome sequences of both RNA and DNA viruses as well as viroids …

Methods for the diagnosis of grapevine viral infections: A review

AV Zherdev, SV Vinogradova, NA Byzova… - Agriculture, 2018 - mdpi.com
The yielding capacity of grapevine growth and the quality of the resulting product heavily
depend on the health of the cultivated plants. The phytopathogens affecting the vineyards …

Genomic characterization of grapevine viruses N and O: novel vitiviruses from South Africa

DA Read, GD Thompson, NL Cordeur… - Archives of …, 2022 - Springer
A survey was performed on a Vitis cultivar collection in Stellenbosch, South Africa.
Metaviromes were generated for each cultivar, using an RNAtag-seq workflow. Analysis of …

High-throughput sequencing and the viromic study of grapevine leaves: From the detection of grapevine-infecting viruses to the description of a new environmental …

JM Hily, T Candresse, S Garcia, E Vigne… - Frontiers in …, 2018 - frontiersin.org
In the past decade, high-throughput sequencing (HTS) has had a major impact on virus
diversity studies as well as on diagnosis, providing an unbiased and more comprehensive …

Detection of new vitiviruses infecting grapevine in California

A Diaz-Lara, RS Brisbane, K Aram, D Golino… - Archives of …, 2019 - Springer
Recently, five new viruses from the genus Vitivirus were identified and named grapevine
virus G, H, I, J and L. These viruses were targeted in a survey to evaluate their prevalence in …

High-throughput sequencing of small rnas for diagnostics of grapevine viruses and viroids in Russia

E Navrotskaya, E Porotikova, E Yurchenko, ZN Galbacs… - Viruses, 2021 - mdpi.com
The use of high-throughput sequencing (HTS) technology has led to significant progress in
the identification of many viruses and their genetic variants. In this study, we used the HTS …

Screening of some Croatian autochthonous grapevine varieties reveals a multitude of viruses, including novel ones

D Vončina, RPP Almeida - Archives of virology, 2018 - Springer
Next-generation sequencing of total RNA samples from four Croatian autochthonous
grapevine varieties revealed the presence of a novel virus in two grapevine accessions. The …

The Sisal Virome: Uncovering the Viral Diversity of Agave Varieties Reveals New and Organ-Specific Viruses

G Quintanilha-Peixoto, PLC Fonseca, FT Raya… - Microorganisms, 2021 - mdpi.com
Sisal is a common name for different plant varieties in the genus Agave (especially Agave
sisalana) used for high-quality natural leaf fiber extraction. Despite the economic value of …

Grapevine virus L: a novel vitivirus in grapevine

H Debat, D Zavallo, RS Brisbane, D Vončina… - European Journal of …, 2019 - Springer
Vitiviruses are ssRNA (+) viruses in the family Betaflexiviridae (subfamily Trivirinae). There
are currently 10 ICTV recognized virus species in the genus; nevertheless, the extended use …

Grapevine virus I, a putative new vitivirus detected in co-infection with grapevine virus G in New Zealand

AG Blouin, KM Chooi, B Warren, KR Napier… - Archives of …, 2018 - Springer
A novel virus, with characteristics of viruses classified within the genus Vitivirus, was
identified from a sample of Vitis vinifera cv. Chardonnay in New Zealand. The virus was …