Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial
Advancements in mass spectrometry‐based proteomics have enabled experiments
encompassing hundreds of samples. While these large sample sets deliver much‐needed …
encompassing hundreds of samples. While these large sample sets deliver much‐needed …
Proximity labeling in plants
Proteins are workhorses in the cell; they form stable and more often dynamic, transient
protein–protein interactions, assemblies, and networks and have an intimate interplay with …
protein–protein interactions, assemblies, and networks and have an intimate interplay with …
Virus-host interactome and proteomic survey reveal potential virulence factors influencing SARS-CoV-2 pathogenesis
J Li, M Guo, X Tian, X Wang, X Yang, P Wu, C Liu… - Med, 2021 - cell.com
Background The ongoing coronavirus disease 2019 (COVID-19) pandemic caused by
severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) is a global public health …
severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) is a global public health …
Synergistic biodegradation of aromatic-aliphatic copolyester plastic by a marine microbial consortium
IE Meyer-Cifuentes, J Werner, N Jehmlich… - Nature …, 2020 - nature.com
The degradation of synthetic polymers by marine microorganisms is not as well understood
as the degradation of plastics in soil and compost. Here, we use metagenomics …
as the degradation of plastics in soil and compost. Here, we use metagenomics …
metaX: a flexible and comprehensive software for processing metabolomics data
B Wen, Z Mei, C Zeng, S Liu - BMC bioinformatics, 2017 - Springer
Background Non-targeted metabolomics based on mass spectrometry enables high-
throughput profiling of the metabolites in a biological sample. The large amount of data …
throughput profiling of the metabolites in a biological sample. The large amount of data …
Assessment of variability in the SOMAscan assay
SOMAscan is an aptamer-based proteomics assay capable of measuring 1,305 human
protein analytes in serum, plasma, and other biological matrices with high sensitivity and …
protein analytes in serum, plasma, and other biological matrices with high sensitivity and …
NOREVA: normalization and evaluation of MS-based metabolomics data
Diverse forms of unwanted signal variations in mass spectrometry-based metabolomics data
adversely affect the accuracies of metabolic profiling. A variety of normalization methods …
adversely affect the accuracies of metabolic profiling. A variety of normalization methods …
NOREVA: enhanced normalization and evaluation of time-course and multi-class metabolomic data
Biological processes (like microbial growth & physiological response) are usually dynamic
and require the monitoring of metabolic variation at different time-points. Moreover, there is …
and require the monitoring of metabolic variation at different time-points. Moreover, there is …
A systematic evaluation of normalization methods in quantitative label-free proteomics
To date, mass spectrometry (MS) data remain inherently biased as a result of reasons
ranging from sample handling to differences caused by the instrumentation. Normalization is …
ranging from sample handling to differences caused by the instrumentation. Normalization is …
Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID
Defining specific protein interactions and spatially or temporally restricted local proteomes
improves our understanding of all cellular processes, but obtaining such data is challenging …
improves our understanding of all cellular processes, but obtaining such data is challenging …