The IBD interactome: an integrated view of aetiology, pathogenesis and therapy

HSP De Souza, C Fiocchi, D Iliopoulos - … Reviews Gastroenterology & …, 2017 - nature.com
Crohn's disease and ulcerative colitis are prototypical complex diseases characterized by
chronic and heterogeneous manifestations, induced by interacting environmental, genomic …

Tumor-derived cell lines as molecular models of cancer pharmacogenomics

A Goodspeed, LM Heiser, JW Gray… - Molecular Cancer …, 2016 - AACR
Compared with normal cells, tumor cells have undergone an array of genetic and epigenetic
alterations. Often, these changes underlie cancer development, progression, and drug …

CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set

WC Reinhold, M Sunshine, H Liu, S Varma, KW Kohn… - Cancer research, 2012 - AACR
High-throughput and high-content databases are increasingly important resources in
molecular medicine, systems biology, and pharmacology. However, the information usually …

Pan-cancer analyses confirmed the cuproptosis-related gene FDX1 as an immunotherapy predictor and prognostic biomarker

C Zhang, Y Zeng, X Guo, H Shen, J Zhang… - Frontiers in …, 2022 - frontiersin.org
Background: The latest research identified cuproptosis as an entirely new mechanism of cell
death. However, as a key regulator in copper-induced cell death, the prognostic and …

P2X7 in cancer: from molecular mechanisms to therapeutics

R Lara, E Adinolfi, CA Harwood, M Philpott… - Frontiers in …, 2020 - frontiersin.org
P2X7 is a transmembrane receptor expressed in multiple cell types including neurons,
dendritic cells, macrophages, monocytes, B and T cells where it can drive a wide range of …

Identification and validation of pyroptosis-related gene signature to predict prognosis and reveal immune infiltration in hepatocellular carcinoma

XW Fu, CQ Song - Frontiers in cell and developmental biology, 2021 - frontiersin.org
Background: Hepatocellular carcinoma (HCC) is characterized by a poor prognosis and
accounts for the fourth common cause of cancer-related deaths. Recently, pyroptosis has …

A multivariate approach to the integration of multi-omics datasets

C Meng, B Kuster, AC Culhane, AM Gholami - BMC bioinformatics, 2014 - Springer
Background To leverage the potential of multi-omics studies, exploratory data analysis
methods that provide systematic integration and comparison of multiple layers of omics …

Pyroptosis-related lncRNAs are potential biomarkers for predicting prognoses and immune responses in patients with UCEC

J Liu, R Geng, S Ni, L Cai, S Yang, F Shao… - … Therapy-Nucleic Acids, 2022 - cell.com
Uterine corpus endometrial carcinoma (UCEC) is a malignant disease globally, and there is
no unified prognostic signature at present. In our study, two clusters were identified. Cluster …

Putative DNA/RNA helicase Schlafen-11 (SLFN11) sensitizes cancer cells to DNA-damaging agents

G Zoppoli, M Regairaz, E Leo… - Proceedings of the …, 2012 - National Acad Sciences
DNA-damaging agents (DDAs) constitute the backbone of treatment for most human tumors.
Here we used the National Cancer Institute Antitumor Cell Line Panel (the NCI-60) to identify …

[HTML][HTML] An alternative splicing network links cell-cycle control to apoptosis

MJ Moore, Q Wang, CJ Kennedy, PA Silver - Cell, 2010 - cell.com
Alternative splicing is a vast source of biological regulation and diversity that is misregulated
in cancer and other diseases. To investigate global control of alternative splicing in human …