Enumerating soil biodiversity

MA Anthony, SF Bender… - Proceedings of the …, 2023 - pnas.org
Soil is an immense habitat for diverse organisms across the tree of life, but just how many
organisms live in soil is surprisingly unknown. Previous efforts to enumerate soil biodiversity …

The landscape of genetic content in the gut and oral human microbiome

BT Tierney, Z Yang, JM Luber, M Beaudin… - Cell host & …, 2019 - cell.com
Despite substantial interest in the species diversity of the human microbiome and its role in
disease, the scale of its genetic diversity, which is fundamental to deciphering human …

Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages

RK Colwell, A Chao, NJ Gotelli, SY Lin… - Journal of plant …, 2012 - academic.oup.com
Aims In ecology and conservation biology, the number of species counted in a biodiversity
study is a key metric but is usually a biased underestimate of total species richness because …

The Global Soil Mycobiome consortium dataset for boosting fungal diversity research

L Tedersoo, V Mikryukov, S Anslan, M Bahram… - Fungal Diversity, 2021 - Springer
Fungi are highly important biotic components of terrestrial ecosystems, but we still have a
very limited understanding about their diversity and distribution. This data article releases a …

Predicting data saturation in qualitative surveys with mathematical models from ecological research

VT Tran, R Porcher, VC Tran, P Ravaud - Journal of clinical epidemiology, 2017 - Elsevier
Objective Sample size in surveys with open-ended questions relies on the principle of data
saturation. Determining the point of data saturation is complex because researchers have …

Arthropod diversity in a tropical forest

Y Basset, L Cizek, P Cuénoud, RK Didham… - Science, 2012 - science.org
Most eukaryotic organisms are arthropods. Yet, their diversity in rich terrestrial ecosystems is
still unknown. Here we produce tangible estimates of the total species richness of …

Patterns of rare and abundant marine microbial eukaryotes

R Logares, S Audic, D Bass, L Bittner, C Boutte… - Current Biology, 2014 - cell.com
Background Biological communities are normally composed of a few abundant and many
rare species. This pattern is particularly prominent in microbial communities, in which most …

[图书][B] Hierarchical modeling and inference in ecology: the analysis of data from populations, metapopulations and communities

JA Royle, RM Dorazio - 2008 - books.google.com
A guide to data collection, modeling and inference strategies for biological survey data using
Bayesian and classical statistical methods. This book describes a general and flexible …

Interpolating, extrapolating, and comparing incidence‐based species accumulation curves

RK Colwell, CX Mao, J Chang - Ecology, 2004 - Wiley Online Library
A general binomial mixture model is proposed for the species accumulation function based
on presence–absence (incidence) of species in a sample of quadrats or other sampling …

Species abundance distributions: moving beyond single prediction theories to integration within an ecological framework

BJ McGill, RS Etienne, JS Gray, D Alonso… - Ecology …, 2007 - Wiley Online Library
Species abundance distributions (SADs) follow one of ecology's oldest and most universal
laws–every community shows a hollow curve or hyperbolic shape on a histogram with many …