Absolute concentration robustness in networks with low-dimensional stoichiometric subspace

N Meshkat, A Shiu, A Torres - Vietnam Journal of Mathematics, 2022 - Springer
A reaction system exhibits “absolute concentration robustness”(ACR) in some species if the
positive steady-state value of that species does not depend on initial conditions …

Absolute concentration robustness and multistationarity in reaction networks: Conditions for coexistence

N Kaihnsa, T Nguyen, A Shiu - European Journal of Applied …, 2024 - cambridge.org
Many reaction networks arising in applications are multistationary, that is, they have the
capacity for more than one steady state, while some networks exhibit absolute concentration …

Multistability of small reaction networks

X Tang, H Xu - SIAM Journal on Applied Dynamical Systems, 2021 - SIAM
For three typical sets of small reaction networks (networks with two reactions, one
irreversible and one reversible reaction, or two reversible-reaction pairs), we completely …

From chemical reaction networks to algebraic and polyhedral geometry--and back again

E Feliu, A Shiu - arXiv preprint arXiv:2501.06354, 2025 - arxiv.org
This is a chapter for a book in honor of Bernd Sturmfels and his contributions. We describe
the contributions by Bernd Sturmfels and his collaborators in harnessing algebraic and …

Mixed volumes of networks with binomial steady-states

JI Coons, M Curiel, E Gross - Journal of Symbolic Computation, 2025 - Elsevier
The steady-state degree of a chemical reaction network is the number of complex steady-
states for generic rate constants and initial conditions. One way to bound the steady-state …

[HTML][HTML] Absolute concentration robustness: Algebra and geometry

LDG Puente, E Gross, HA Harrington… - Journal of Symbolic …, 2025 - Elsevier
Motivated by the question of how biological systems maintain homeostasis in changing
environments, Shinar and Feinberg introduced in 2010 the concept of absolute …

Positive Steady-State Varieties of Small Chemical Reaction Networks

M Curiel, E Farr, G Fries, LDG Puente… - arXiv preprint arXiv …, 2024 - arxiv.org
Chemical reaction network theory is a field of applied mathematics concerned with modeling
chemical systems, and can be used in other contexts such as in systems biology to study …

Absolute concentration robustness algebra and geometry

LD García Puente, E Gross, HA Harrington… - Journal of Symbolic …, 2024 - ora.ox.ac.uk
Motivated by the question of how biological systems maintain homeostasis in changing
environments, Shinar and Feinberg introduced in 2010 the concept of absolute …

Newton-Okounkov bodies of chemical reaction systems

NK Obatake, E Walker - Advances in Applied Mathematics, 2024 - Elsevier
Despite their noted potential in polynomial-system solving, there are few concrete examples
of Newton-Okounkov bodies arising from applications. Accordingly, in this paper, we …

Algebraic and Combinatorial Applications in Systems and Evolutionary Biology

M Curiel - 2024 - search.proquest.com
Many real-world problems can be expressed as the solution set of polynomial equations.
Under these constraints, these problems are addressed using tools from (computational) …