Multi-omics data integration, interpretation, and its application

I Subramanian, S Verma, S Kumar… - … and biology insights, 2020 - journals.sagepub.com
To study complex biological processes holistically, it is imperative to take an integrative
approach that combines multi-omics data to highlight the interrelationships of the involved …

[HTML][HTML] Computational approaches in target identification and drug discovery

T Katsila, GA Spyroulias, GP Patrinos… - Computational and …, 2016 - Elsevier
In the big data era, voluminous datasets are routinely acquired, stored and analyzed with the
aim to inform biomedical discoveries and validate hypotheses. No doubt, data volume and …

dbNSFP v4: a comprehensive database of transcript-specific functional predictions and annotations for human nonsynonymous and splice-site SNVs

X Liu, C Li, C Mou, Y Dong, Y Tu - Genome medicine, 2020 - Springer
Whole exome sequencing has been increasingly used in human disease studies.
Prioritization based on appropriate functional annotations has been used as an …

The BioMart community portal: an innovative alternative to large, centralized data repositories

D Smedley, S Haider, S Durinck, L Pandini… - Nucleic acids …, 2015 - academic.oup.com
Abstract The BioMart Community Portal (www. biomart. org) is a community-driven effort to
provide a unified interface to biomedical databases that are distributed worldwide. The …

The evolutionary landscape of alternative splicing in vertebrate species

NL Barbosa-Morais, M Irimia, Q Pan, HY Xiong… - Science, 2012 - science.org
How species with similar repertoires of protein-coding genes differ so markedly at the
phenotypic level is poorly understood. By comparing organ transcriptomes from vertebrate …

dbNSFP v2. 0: a database of human non‐synonymous SNVs and their functional predictions and annotations

X Liu, X Jian, E Boerwinkle - Human mutation, 2013 - Wiley Online Library
ABSTRACT dbNSFP is a database developed for functional prediction and annotation of all
potential non‐synonymous single‐nucleotide variants (nsSNVs) in the human genome. This …

Transcriptome responses to combinations of stresses in Arabidopsis

S Rasmussen, P Barah, MC Suarez-Rodriguez… - Plant …, 2013 - academic.oup.com
Biotic and abiotic stresses limit agricultural yields, and plants are often simultaneously
exposed to multiple stresses. Combinations of stresses such as heat and drought or cold …

International Cancer Genome Consortium Data Portal—a one-stop shop for cancer genomics data

J Zhang, J Baran, A Cros, JM Guberman, S Haider… - Database, 2011 - academic.oup.com
Abstract The International Cancer Genome Consortium (ICGC) is a collaborative effort to
characterize genomic abnormalities in 50 different cancer types. To make this data …

PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways

A Bhattacharya, JD Ziebarth, Y Cui - Nucleic acids research, 2014 - academic.oup.com
Poly morphisms in mi cro R NAs (miRNAs) and their t arget s ites (PolymiRTS) are known to
disrupt miRNA function, leading to the development of disease and variation in physiological …

Modulation of splicing catalysis for therapeutic targeting of leukemia with mutations in genes encoding spliceosomal proteins

SCW Lee, H Dvinge, E Kim, H Cho, JB Micol… - Nature medicine, 2016 - nature.com
Mutations in genes encoding splicing factors (which we refer to as spliceosomal genes) are
commonly found in patients with myelodysplastic syndromes (MDS) and acute myeloid …