A user's guide to machine learning for polymeric biomaterials

TA Meyer, C Ramirez, MJ Tamasi, AJ Gormley - ACS Polymers Au, 2022 - ACS Publications
The development of novel biomaterials is a challenging process, complicated by a design
space with high dimensionality. Requirements for performance in the complex biological …

Understanding the performance of biomaterials through molecular modeling: crossing the bridge between their intrinsic properties and the surface adsorption of …

G Raffaini, F Ganazzoli - Macromolecular bioscience, 2007 - Wiley Online Library
Molecular modeling and computer simulations can yield significant new insight at the
atomistic level about the performance of biomaterials in a biological environment. In this …

Protein adsorption on a hydrophobic surface: a molecular dynamics study of lysozyme on graphite

G Raffaini, F Ganazzoli - Langmuir, 2010 - ACS Publications
Adsorption of human lysozyme on hydrophobic graphite is investigated through atomistic
computer simulations with molecular mechanics (MM) and molecular dynamics (MD) …

Surface interactions between ketoprofen and silica-based biomaterials as drug delivery system synthesized via sol–gel: a molecular dynamics study

G Raffaini, M Catauro - Materials, 2022 - mdpi.com
Biomaterial-based drug delivery systems for a controlled drug release are drawing
increasing attention thanks to their possible pharmaceutical and biomedical applications. It …

Molecular modeling and phylogenetic analyses highlight the role of amino acid 347 of the N1 subtype neuraminidase in influenza virus host range and interspecies …

S Elli, G Raffaini, M Guerrini… - Frontiers in …, 2023 - frontiersin.org
The N1 neuraminidases (NAs) of avian and pandemic human influenza viruses contain
tyrosine and asparagine, respectively, at position 347 on the rim of the catalytic site; the …

Hybrid Organic–Inorganic Biomaterials as Drug Delivery Systems: A Molecular Dynamics Study of Quercetin Adsorption on Amorphous Silica Surfaces

G Raffaini, P Pirozzi, M Catauro, A D'Angelo - Coatings, 2024 - mdpi.com
Many important drugs in pharmaceutical applications are poorly soluble. Solubilization,
which is diffusion through biological barriers, and the control of local administration are …

Hydration and flexibility of α-, β-, γ-and δ-cyclodextrin: A molecular dynamics study

G Raffaini, F Ganazzoli - Chemical physics, 2007 - Elsevier
The conformational behaviour in vacuo and in explicit water, and the hydration of the
macrocyclic oligosaccharides cyclodextrins (CDs) containing from six up to nine sugar rings …

Adsorption and Self-Aggregation of Chiral [5]-Aza [6] helicenes on DNA Architecture: A Molecular Dynamics Study

G Raffaini - The Journal of Physical Chemistry B, 2023 - ACS Publications
Helicenes are an extremely interesting class of conjugated molecules without asymmetric
carbon atoms but with intrinsic chirality. These molecules can interact with double-stranded …

Protein adsorption on biomaterial and nanomaterial surfaces: a molecular modeling approach to study non-covalent interactions

G Raffaini, F Ganazzoli - Journal of Applied Biomaterials and …, 2010 - journals.sagepub.com
Atomistic computer simulations of protein adsorption on the heterogeneous surface of
biomaterials and nanomaterials are reviewed. First, we present a very brief introduction to …

Adsorption Affinities of Small Volatile Organic Molecules on Graphene Surfaces for Novel Nanofiller Design: A DFT Study

F Moriggi, V Barbera, M Galimberti, G Raffaini - Molecules, 2023 - mdpi.com
The adsorption of organic molecules on graphene surfaces is a crucial process in many
different research areas. Nano-sized carbon allotropes, such as graphene and carbon …