Molecular dynamics simulations of ionic liquids and electrolytes using polarizable force fields

D Bedrov, JP Piquemal, O Borodin… - Chemical …, 2019 - ACS Publications
Many applications in chemistry, biology, and energy storage/conversion research rely on
molecular simulations to provide fundamental insight into structural and transport properties …

Modeling molecular interactions in water: From pairwise to many-body potential energy functions

GA Cisneros, KT Wikfeldt, L Ojamäe, J Lu… - Chemical …, 2016 - ACS Publications
Almost 50 years have passed from the first computer simulations of water, and a large
number of molecular models have been proposed since then to elucidate the unique …

Beyond Born–Mayer: Improved models for short-range repulsion in ab initio force fields

MJ Van Vleet, AJ Misquitta, AJ Stone… - Journal of chemical …, 2016 - ACS Publications
Short-range repulsion within intermolecular force fields is conventionally described by either
Lennard-Jones (A/r 12) or Born–Mayer (A exp (− Br)) forms. Despite their widespread use …

Force Field for Mg2+, Mn2+, Zn2+, and Cd2+ Ions That Have Balanced Interactions with Nucleic Acids

MT Panteva, GM Giambasu… - The Journal of Physical …, 2015 - ACS Publications
Divalent metal ions are of fundamental importance to the function and folding of nucleic
acids. Divalent metal ion–nucleic acid interactions are complex in nature and include both …

LICHEM: A QM/MM program for simulations with multipolar and polarizable force fields

EG Kratz, AR Walker, L Lagardère… - Journal of …, 2016 - Wiley Online Library
We introduce an initial implementation of the LICHEM software package. LICHEM can
interface with Gaussian, PSI4, NWChem, TINKER, and TINKER–HP to enable QM/MM …

Development of the quantum-inspired SIBFA many-body polarizable force field: enabling condensed-phase molecular dynamics simulations

S Naseem-Khan, L Lagardère, C Narth… - Journal of chemical …, 2022 - ACS Publications
We present the extension of the Sum of Interactions Between Fragments Ab initio Computed
(SIBFA) many-body polarizable force field to condensed-phase molecular dynamics (MD) …

Perspective: Ab initio force field methods derived from quantum mechanics

P Xu, EB Guidez, C Bertoni, MS Gordon - The Journal of Chemical …, 2018 - pubs.aip.org
It is often desirable to accurately and efficiently model the behavior of large molecular
systems in the condensed phase (thousands to tens of thousands of atoms) over long time …

Classical exchange polarization: An anisotropic variable polarizability model

MKJ Chung, Z Wang, JA Rackers… - The Journal of Physical …, 2022 - ACS Publications
Polarizability, or the tendency of the electron distribution to distort under an electric field,
often depends on the local chemical environment. For example, the polarizability of a …

ISA-Pol: Distributed polarizabilities and dispersion models from a basis-space implementation of the iterated stockholder atoms procedure

AJ Misquitta, AJ Stone - Theoretical Chemistry Accounts, 2018 - Springer
Recently, we have developed a robust, basis-space implementation of the iterated
stockholder atoms (BS-ISA) approach for defining atoms in a molecule. This approach has …

New angles on standard force fields: Toward a general approach for treating atomic-level anisotropy

MJ Van Vleet, AJ Misquitta… - Journal of Chemical …, 2018 - ACS Publications
Nearly all standard force fields employ the “sum-of-spheres” approximation, which models
intermolecular interactions purely in terms of interatomic distances. Nonetheless, atoms in …